Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14o06
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF016673-5|AAB66123.1|  684|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF067613-4|AAU20845.1|  327|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr...    28   6.4  
EF473216-1|ABQ42568.1|  262|Caenorhabditis elegans endoplasmic r...    27   8.5  
AF039719-9|AAB96749.3|  262|Caenorhabditis elegans Hypothetical ...    27   8.5  
AF016415-2|AAW88413.1|  296|Caenorhabditis elegans Serpentine re...    27   8.5  

>AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical
           protein F40E12.2 protein.
          Length = 1251

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = +1

Query: 364 RLVDGIDKIKPILDSTDQSTKRLTIVCNMQNFWVTLIIDYENAITYYTDTRNQ 522
           +L DG+DKIK +L S    T   T+   +++F VT++   E  +++ T T NQ
Sbjct: 133 KLKDGLDKIK-VLQSLVDETNSKTLQYFVEDFEVTIL---EKLVSFETVTFNQ 181


>AF016673-5|AAB66123.1|  684|Caenorhabditis elegans Hypothetical
           protein T06D4.4 protein.
          Length = 684

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 97  FFANFSVNMSTNNHISSVMIQKSEKGHCE 11
           FF  F ++      + SV I+K EKGH E
Sbjct: 519 FFMGFIISRELGRSLDSVRIRKDEKGHTE 547


>AF067613-4|AAU20845.1|  327|Caenorhabditis elegans Hypothetical
           protein F56D6.7 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -1

Query: 504 VIRYSVFIIYNQCDP--KVLHVANDCQSFGALVGRVQNRFYFVYAVYKSEYVVPVLL 340
           VI Y   II+    P    +H  ND +   ALV  + N FY    +    YV+ VLL
Sbjct: 27  VIDYGTIIIFFAIFPFYVYVHKINDVKDREALVFPITNHFYKTVVLMIIGYVIVVLL 83


>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
 Frame = +1

Query: 232 NDQSIVDAMINSFN---NSLQISDRQQELMCLAQDEFGLQQDRDHVFRLVDGIDKIKPIL 402
           N+Q+IVD  +  FN   NS+ I +++ +++       G     +   RL + IDKI  I 
Sbjct: 23  NNQNIVDFSVKDFNKNINSIDILNKKWDIVSKYVKFNGNSSKLNGRLRLSEKIDKI--IF 80

Query: 403 DSTDQSTKRLTIVCNMQNFWVTLIIDYENAITYYTDTRNQKMDESLKQIV 552
              D    +  I+ ++ N   T        +T +TD+   K+  S KQ+V
Sbjct: 81  KLGDDGANQNEIIVSLGNRNTT-------HMTVHTDSYKMKVSTS-KQVV 122


>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
           protein K02B12.5 protein.
          Length = 1204

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 481 YENAITYYTDTRNQKMDESLKQIVTDHVPDGQIAN 585
           YEN   Y++D RN++     KQ  TD++P+  I N
Sbjct: 440 YENWANYWSDKRNEENAIKWKQ-ETDNIPEVVIKN 473


>EF473216-1|ABQ42568.1|  262|Caenorhabditis elegans endoplasmic
           reticulum-like protein protein.
          Length = 262

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +1

Query: 193 NITNI*TNKMVDPNDQSIVDAMINSFNNSLQISDRQQELMCLAQDEFGLQQDRDHVFRLV 372
           N+ N   NK+ + N     D  +    NS   + R QEL+ L +D   L+  R+++   +
Sbjct: 80  NLLNEEVNKLNNKNYTLDADGRVCLVKNSSNDTSRHQELILLQKDTHELRCLREYLMLAL 139

Query: 373 DGI 381
           + I
Sbjct: 140 EAI 142


>AF039719-9|AAB96749.3|  262|Caenorhabditis elegans Hypothetical
           protein K04F10.3 protein.
          Length = 262

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +1

Query: 193 NITNI*TNKMVDPNDQSIVDAMINSFNNSLQISDRQQELMCLAQDEFGLQQDRDHVFRLV 372
           N+ N   NK+ + N     D  +    NS   + R QEL+ L +D   L+  R+++   +
Sbjct: 80  NLLNEEVNKLNNKNYTLDADGRVCLVKNSSNDTSRHQELILLQKDTHELRCLREYLMLAL 139

Query: 373 DGI 381
           + I
Sbjct: 140 EAI 142


>AF016415-2|AAW88413.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 29 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = -1

Query: 525 FLISSVCVI--RYSVFIIYNQCDPKVLHVANDCQSFGALVGRVQNRFYFVY--AVYKSEY 358
           FLI  V ++   +   +++  CD K   +  +C++FG  V +  + ++ +    V+    
Sbjct: 127 FLIFQVALVYGSFDYIVLFVFCDCKTNLIPENCKNFGCAVNKCFSNYFRIQRSTVFSINV 186

Query: 357 VVPVLL 340
            V +LL
Sbjct: 187 FVSILL 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,510,295
Number of Sequences: 27780
Number of extensions: 304069
Number of successful extensions: 782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)