Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14o04
(374 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 26 2.2
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 25 2.9
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 3.9
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 25 5.1
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 24 6.8
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 24 6.8
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 24 6.8
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 24 6.8
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 24 6.8
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 24 6.8
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 24 9.0
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 24 9.0
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 9.0
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 24 9.0
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 24 9.0
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 2.2
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -1
Query: 281 DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 102
D +PS P +SS+ S RH + +L S + D LRD + + RVS+
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 2.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 232 VDDFRSWRGVVLGRAASCCDLLRLS 306
VD FR W + SC DLL+LS
Sbjct: 72 VDGFRLWITMEYCDGGSCLDLLKLS 96
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 3.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = +1
Query: 73 DFTSR-----VSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSG 195
DF+SR + + RRR P SRR + RA ++R SG
Sbjct: 5 DFSSRSLFLEAKEEEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSG 50
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 5.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 302 SLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 141
+++ + D L TT + STDY + +TE +L S K+T SI+
Sbjct: 349 NVDDEEDDDFLDVTTATSLQNKSTDYGSVKRKTE---NLNSDSDIQNKRTKSIE 399
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 24.2 bits (50), Expect = 6.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 314 GAGLSLNRSQHDAALPSTTPRQERKSS 234
G LS+ S+ DAALP+ P E + S
Sbjct: 427 GRPLSIADSECDAALPTVVPELEIEGS 453
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 24.2 bits (50), Expect = 6.8
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Frame = +1
Query: 1 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASR 180
+++ GK+ V P + DF + +S S+ ++S G R R
Sbjct: 308 STVERKGKEASEVNPNSTSSVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGR 360
Query: 181 LRRSGYNSVRC-RGSE*SVDDFRSWRGVVLGR 273
R +G NS C + V + R RG GR
Sbjct: 361 CRDAGLNSEDCISDDDMPVSNARKPRGRGRGR 392
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 24.2 bits (50), Expect = 6.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 75 LY*SRFAFKTR-DATSKPIWIAEIDAIGFFLNTCI 176
LY +F R ATS I + EID G+F N+ +
Sbjct: 467 LYYKKFVEAIRASATSMAIALEEIDEYGYFHNSFV 501
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 24.2 bits (50), Expect = 6.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 256 PARNGSRLQTIPSPDIELSYIRTFGAVMHVLRKKPIAS 143
P+ NG R++ SP E+++ AVM +RK+ + +
Sbjct: 186 PSENG-RIRVSMSPQNEINFTPENPAVMEKIRKRGVCN 222
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 24.2 bits (50), Expect = 6.8
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = -1
Query: 320 SPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR-SRDARVKKKTDSI 144
S + S SQH L P E+KS D S PR + + R R K D+
Sbjct: 134 SSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPS-PRRKPSFFSKSNLKRKYRYLKNPDAW 192
Query: 143 DL 138
+L
Sbjct: 193 NL 194
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 24.2 bits (50), Expect = 6.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 140 LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDS 12
L P+G R VS + +++K+ C P SRG TV PD+
Sbjct: 6 LSSPSGAR--VSSVTVKNKVLKTPCFFLPTSRG-TVPHLTPDN 45
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 23.8 bits (49), Expect = 9.0
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = +3
Query: 96 FKTRDATSKPIWIAEIDAIGFFLN 167
++T++ + IW+ I +G++ N
Sbjct: 236 YETQEQITASIWVEHISKLGYYFN 259
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 23.8 bits (49), Expect = 9.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 331 IKTNHLAQG*VSTDRSTTLLYRAQHPARNGSRLQTIPSPD 212
+K + + + + TL + AQ A++ +LQT+PS D
Sbjct: 135 LKPTRITRQEIGQQLTETLGFGAQLLAQHLEKLQTVPSTD 174
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 23.8 bits (49), Expect = 9.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 287 QHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRD 174
QH+ +L P + S+ + E + E + + RSRD
Sbjct: 33 QHNGSLAHEGPTNQTDYSSRHHESQFSQEAHAEQRSRD 70
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 23.8 bits (49), Expect = 9.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 123 PIWIAEIDAIGFFLNTCITAP 185
P W+AE+ AI F++ + AP
Sbjct: 43 PFWLAEVLAINSFVSIHMPAP 63
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 23.8 bits (49), Expect = 9.0
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = -1
Query: 305 LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDL 138
++L + + S +E ST+YS P E PD + + V+ K +L
Sbjct: 230 IALKEKESTSQDESNREAEEAPISTNYSFPSSSLEDQPDKNVQSSAVENKNKHTNL 285
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,022
Number of Sequences: 5004
Number of extensions: 26108
Number of successful extensions: 78
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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