Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14o04
(374 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.097
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.39
01_06_0695 - 31292622-31293317 28 2.1
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 2.7
07_03_0846 - 21983581-21986055 28 2.7
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 27 3.6
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 3.6
10_08_0113 - 14896341-14897153 27 4.8
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 4.8
01_06_0723 + 31501900-31502808,31502846-31503295 27 4.8
01_05_0118 + 18335065-18335553 27 4.8
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 4.8
07_03_0699 + 20772415-20773450,20789050-20789606,20790971-207915... 26 8.4
01_01_0785 - 6076089-6077615 26 8.4
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.097
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -1
Query: 269 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 141
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.39
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 1 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 135
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -1
Query: 317 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 183
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 2.7
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -1
Query: 323 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 144
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 143 D 141
+
Sbjct: 791 E 791
>07_03_0846 - 21983581-21986055
Length = 824
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -1
Query: 143 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 6
DL+D G +R +C+T S PD S VS+ LPD+A+
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQ 369
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 27.5 bits (58), Expect = 3.6
Identities = 22/85 (25%), Positives = 29/85 (34%)
Frame = -1
Query: 296 NRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLR 117
+RS+ A R +S D P HR P R R K D R P+
Sbjct: 501 SRSRSPAEHQRRDVRNRLRSGRDGGGPDHRNSSPPVNRGRSRSRSKSRDPSKSRSPDAPA 560
Query: 116 RRVSRFECETRLVKSHCLEPPDSRG 42
++ S R S P S+G
Sbjct: 561 KKGSSKYNRRRSSSSRSSSPAGSKG 585
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 20 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 124
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>10_08_0113 - 14896341-14897153
Length = 270
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = +3
Query: 201 LSSMSGLGIVCRRL----PFLAGCCAR 269
L++++GLGI RR P LAGCC R
Sbjct: 181 LAAIAGLGIPWRRSWPSPPSLAGCCCR 207
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 52 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 150
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>01_06_0723 + 31501900-31502808,31502846-31503295
Length = 452
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 317 PGAGLSLNRSQHDAALPSTTPRQERKS-STDYSEP 216
PG L + DAA +TT +++R++ DYS P
Sbjct: 93 PGRALGFFHKEQDAAAVATTRKRKRRAIIVDYSTP 127
>01_05_0118 + 18335065-18335553
Length = 162
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 10 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSR 138
A+ G + V P +GG+++ + ++ K T RR+ FG+R
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNR 59
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.1 bits (57), Expect = 4.8
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 266 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDS-IDLRDPNGLRR 114
S +PR+ R YS R R+ RD+R ++++ S D R P G R
Sbjct: 143 SPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRSPRGSPR 194
>07_03_0699 +
20772415-20773450,20789050-20789606,20790971-20791567,
20792258-20792413
Length = 781
Score = 26.2 bits (55), Expect = 8.4
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -1
Query: 266 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECET 87
+ +PR S +D S P H ++ + D VKK + +L D G E E
Sbjct: 591 AASPRLTSISDSDGSYPVHAAAMFGRTKIIDELVKKCPNYYELVDDKGRNLLHIAVESEQ 650
Query: 86 RLVKSH 69
+V H
Sbjct: 651 EMVVRH 656
>01_01_0785 - 6076089-6077615
Length = 508
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 20 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAH 127
A + SLWSPES E + + Q R+V H
Sbjct: 336 AEVASLWSPESGEPITAEKIAEMKYTQAVAREVVRH 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,160,642
Number of Sequences: 37544
Number of extensions: 201070
Number of successful extensions: 701
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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