Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14o04
(374 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 25 0.29
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 22 2.7
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 21 4.8
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 21 6.3
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 6.3
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 21 6.3
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 6.3
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 21 6.3
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 6.3
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 20 8.3
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 25.0 bits (52), Expect = 0.29
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 302 SLNRSQHDAALPSTTPRQERKSST 231
++N+ Q + TTP++ERK++T
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTAT 799
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.8 bits (44), Expect = 2.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 301 VSTDRSTTLLYRAQHPARNGSRLQTIPSP 215
VS DR++ + YR +PA +Q+ PSP
Sbjct: 416 VSPDRTSPMEYRLYNPA----LIQSQPSP 440
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.0 bits (42), Expect = 4.8
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 97 SKRE-TRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWRGVVLGR 273
++RE R +PF + + S L RA RSG SV+ +E F G + GR
Sbjct: 502 ARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTE-----FGIPTGTLYGR 556
Query: 274 A-ASCCDLLRLSPAP 315
+L R +P P
Sbjct: 557 CKREGIELSRSNPTP 571
Score = 21.0 bits (42), Expect = 4.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 300 SQQIAARRCSTEHNTPPGT 244
S Q + +R STE P GT
Sbjct: 534 SGQTSVQRASTEFGIPTGT 552
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 20.6 bits (41), Expect = 6.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 233 TDYSEPRHRTELYPDLRSRDARVKKKTDSIDL 138
T SE + L+P L SRD ++ ++++L
Sbjct: 407 TSASELVESSVLFPSLDSRDELHPRELEAVNL 438
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = -1
Query: 257 PRQERKSSTDYSEPRHRTELYPD 189
PR+ R+ T+Y E R++ + + +
Sbjct: 405 PREMRQRITEYFEHRYQGKFFDE 427
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 20.6 bits (41), Expect = 6.3
Identities = 14/66 (21%), Positives = 25/66 (37%)
Frame = -1
Query: 299 LNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGL 120
LN + + P PR++ +++ P +R + S+DL GL
Sbjct: 327 LNFQEERRSEPVEPPRRKNNCPLHCKPELGQSQSSPKFVARREESNSSSPSLDLGKEGGL 386
Query: 119 RRRVSR 102
+ SR
Sbjct: 387 EAQWSR 392
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = -1
Query: 257 PRQERKSSTDYSEPRHRTELYPD 189
PR+ R+ T+Y E R++ + + +
Sbjct: 373 PREMRQRITEYFEHRYQGKFFDE 395
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 250 RNGSRLQTIPSPDIEL 203
RNG+ L+T+ P+I +
Sbjct: 346 RNGADLETLNEPEIRV 361
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 20.6 bits (41), Expect = 6.3
Identities = 9/39 (23%), Positives = 18/39 (46%)
Frame = -1
Query: 257 PRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 141
P+Q+++ + + + YPDL + A K + D
Sbjct: 1450 PQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDKKSACD 1488
Score = 20.2 bits (40), Expect = 8.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 70 CDFTSRVSHSKRETRRRSP 126
CD V HS ++T+++ P
Sbjct: 1487 CDSKLIVDHSSQKTQQQQP 1505
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 20.2 bits (40), Expect = 8.3
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = -1
Query: 287 QHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDAR 168
QH + S +Q++ + + + LYP +RS+ R
Sbjct: 231 QHQGVVTSPLSQQQQAAPQGAASANLPSPLYPWMRSQFER 270
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,812
Number of Sequences: 438
Number of extensions: 1734
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 9052365
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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