Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14o03
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   6.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 119 QSQAVGFSRSNKLLLFLAVIATHLDYCIFVK 211
           Q +AV     ++  L   V+  HLD C F +
Sbjct: 164 QEKAVAAELEDEQRLLATVVQAHLDTCDFTR 194


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 202 LRQTTGSWLILRGTDCNRCVWSTA-SKFCDIRVYCLR 309
           +RQ T S+ +  G  C++C +  A S  C I V C +
Sbjct: 28  IRQGTTSYCLGCGDSCHKCKYGIAMSSACGI-VQCAK 63



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 247 CNRCVWSTASKF 282
           CN+C+  +A KF
Sbjct: 87  CNKCIGCSAEKF 98



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 292 ECHKTLTPCSTH 257
           EC KT  PC  H
Sbjct: 99  ECSKTSNPCLPH 110


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 168  KNRRSLFEREKPTAWLWIENAPDRVTPTRVCG 73
            + +RSLF+   P   L +++AP    P   CG
Sbjct: 1248 ERQRSLFKDSSPATALMLQHAP----PAYSCG 1275


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 533 YS*YNKISRTYKNTRTFSNK*N 468
           YS YN  +  Y N   ++N  N
Sbjct: 324 YSNYNNYNNNYNNYNNYNNNYN 345


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 93  LHDRARSRSKAKQ*ASPARISFSCSWPSSP 182
           +H R RS  K+K  A+ A    S S  SSP
Sbjct: 365 MHGRGRSGKKSKFNAAVAAAVQSSSIVSSP 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,202
Number of Sequences: 438
Number of extensions: 3778
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)