Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14n21
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.09 |||mitochondrial type II fatty acid synthase componen... 74 1e-14
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 29 0.58
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 28 1.0
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 27 1.8
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 27 2.3
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 27 2.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.1
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 25 5.4
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 7.2
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 25 9.5
>SPAC4H3.09 |||mitochondrial type II fatty acid synthase
component|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 74.1 bits (174), Expect = 1e-14
Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = +1
Query: 256 KSRVLLVLQLYDKI-NPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERL 432
+ R+L V+ +DKI +P+++T S F NDLGLDSLD VEV+MA+E+EF +IPD DA+ +
Sbjct: 36 EKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDADEI 95
Query: 433 VRPKDIVQYI 462
D + YI
Sbjct: 96 TSVGDAISYI 105
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 28.7 bits (61), Expect = 0.58
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = +1
Query: 247 DLIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAE 426
DL+ + + LY ++ ++ F + SLD+ I+ M+ GFEI E
Sbjct: 256 DLVTTTITFTPLLYAQLYQQRCKTFRPFHLPSDVHSLDYERAILGMKLSCGFEILYNSKE 315
Query: 427 RLVRPKDIVQYI 462
+ + +I +Y+
Sbjct: 316 NVEKRTEIDEYL 327
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 259 SRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEF 396
S+VLL LQ I P L + + M +LG + D+ E ++ + ++
Sbjct: 296 SQVLLTLQSVKDIEPPALWQEPNSMEELGKELKDNKEQLVKQDQKY 341
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 1.8
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 192 WERETWYPQVQRWPSPHLRPYK 257
WE + + P RW H +P+K
Sbjct: 156 WENDVYGPNEDRWDENHAQPHK 177
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 2.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 27 NGCCEYFPKCFRW 65
NG CE++ K FRW
Sbjct: 326 NGACEHYKKSFRW 338
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -3
Query: 462 NVLDNVFWSNQSLCIT--IRYLKSKFIFHCH 376
N LDNVF S + L + + YL+ +F FHC+
Sbjct: 64 NKLDNVFSSLEWLTKSDAVIYLEDQFHFHCY 94
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 198 RETWYPQVQRWPSPHLRPYKK 260
+ETWY ++QRW L Y+K
Sbjct: 1296 KETWYEKLQRWEDA-LSAYEK 1315
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 80 DLRNRPPKALRKIFAAAISSSSRNAF 3
+LR R + LR +AA +SSS+ N F
Sbjct: 59 ELRIRRNRLLRGSYAAGVSSSAMNGF 84
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 402 KSKFIFHCHYDLNMVQ*VKTQIIHEVAIYSQLF 304
K FI HCH++L+ +++ A+YS L+
Sbjct: 90 KRNFILHCHHELS-----SGELLRNSALYSILY 117
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 502 YIFFIIHKYLPCQQCIGQCLLV*PVSL 422
YI FI+H+ L + C LV P+ L
Sbjct: 717 YILFILHQLLDKESDDSACFLVGPILL 743
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,051
Number of Sequences: 5004
Number of extensions: 39528
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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