Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14n17
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087078-1|AAG37943.1|  198|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AC087078-1|AAG37943.1|  198|Caenorhabditis elegans Hypothetical
           protein Y34F4.2 protein.
          Length = 198

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +1

Query: 181 KYFKLTPTTLYNNNMSILNVVEACDLAHTFLKLGY-LFRAKTCLDIALDNLKLLRRKTNI 357
           KY  L  T L    +++L +    D  H F++ GY L+     + I+  N+ ++RR    
Sbjct: 105 KYMLLASTLLLIVGLNLLTLSAKWDEEHEFVRYGYSLWLLVASICISPFNILVVRRFEES 164

Query: 358 KEVAVMLNK 384
            E+   L K
Sbjct: 165 AEMKQKLTK 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,220,618
Number of Sequences: 27780
Number of extensions: 172462
Number of successful extensions: 428
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)