Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14m16
(410 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 30 0.12
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 29 0.21
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.28
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 27 0.86
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 2.0
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 2.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 4.6
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 4.6
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 24 8.0
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 24 8.0
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 30.3 bits (65), Expect = 0.12
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 28 FNKRSIMNSGDDDA---TRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNL 198
F+ R+++ S D+D RL+YS A T +A + S A+ V+ + KNNL
Sbjct: 140 FSLRTVLQSRDEDLLWRARLYYSFLQADMDYLTNYARPSPDSAVPGAVGTVAIITSKNNL 199
Query: 199 N 201
+
Sbjct: 200 S 200
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 29.5 bits (63), Expect = 0.21
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 238 NFEI-NVFGKSLLLSKFVNFCIANSDGVTI 324
NF++ +FGK + L + +N+C AN GV I
Sbjct: 179 NFKVAKLFGKHIRLEEHINYCKANKIGVGI 208
>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 29.1 bits (62), Expect = 0.28
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 178 LLFKNNLNLMVACNLINTL-INFEINVFGKS-LLLSKFVN 291
LLFKN+L L+ AC +NT IN+ L+L +F N
Sbjct: 156 LLFKNSLVLLAACYFMNTTPSRLVINLIRSGYLILKRFAN 195
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 27.5 bits (58), Expect = 0.86
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 299 MQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNV 162
++ LTN LS LP++LIS I +L KL ++ L ++T V
Sbjct: 385 LKSLTNSLSTMALPDSLISLHIELLRKLCSSENDFCSLLVEIITEV 430
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 2.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 196 LNLMVACNLINTLINFEINVFGKSLLLSKFVNF 294
+N+ V+ L+NTLI +I FG ++ + + + F
Sbjct: 183 VNICVSAKLVNTLIIEQIKFFGVNIGIGRAILF 215
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 2.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 308 LLAMQKLTNLLSNKLLPNTLISKLINVLIKLH 213
LLA Q T L+SNK L L +L L +H
Sbjct: 204 LLAEQAETELISNKRLSTKLPGRLQRALASIH 235
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.0 bits (52), Expect = 4.6
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +1
Query: 118 LFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVFGK--SLLLSKFVN 291
L A R+H+S IT VST+L +LMV C L+ I +V GK S +L +F
Sbjct: 2756 LSALRDHTS-----ITHVSTVLLPLIESLMVICRLV--FIELPEDV-GKHISPILERFKT 2807
Query: 292 FCIANSDGVTIQHKMLTNVLSF 357
I+ T +H+ + N++ F
Sbjct: 2808 LFIS----FTEEHRKIINMMVF 2825
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 4.6
Identities = 15/46 (32%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Frame = +1
Query: 235 INFEINVFGKSLLLSKF-VNFCIANSDGV--TIQHKMLTNVLSFLL 363
INFEI++ K+ L+KF V+ + +++ + +Q+K+ N++S +L
Sbjct: 775 INFEISILQKATNLTKFKVSSHMKHAEIMFSDVQYKVFINMMSNIL 820
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 24.2 bits (50), Expect = 8.0
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +1
Query: 85 SNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVFGK 264
S+A Q + T F S+ YEY + + N N + A L N + + I+ F K
Sbjct: 296 SSAQIVQVILTRFQRVTFSTGYEYLGLSDAIFSIEKNFNSLTAYELPNYIRSDIIDDFKK 355
Query: 265 SLL 273
+
Sbjct: 356 EAM 358
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 24.2 bits (50), Expect = 8.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 275 SNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNVMAY 153
S+ +L LIS L++ + L AT KF+ ++ + L + Y
Sbjct: 460 SHAVLLTFLISALVHEFVMLLATGKFRCYILTFQLLQIPLY 500
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,240
Number of Sequences: 5004
Number of extensions: 25680
Number of successful extensions: 77
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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