Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14m15
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    68   8e-13
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   3.3  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   5.8  

>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 68.1 bits (159), Expect = 8e-13
 Identities = 36/83 (43%), Positives = 50/83 (60%)
 Frame = +2

Query: 308 LDSMKVIAESVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQKLSITDIDHAL 487
           ++S+K +AE +GI  L D+ A  +A D+ YR+  +VQ+A KFM HSKR  L+  DI  AL
Sbjct: 8   IESIKDVAEMLGIGNLADEPAAAIAMDLEYRIHQVVQEATKFMVHSKRTVLTSADISSAL 67

Query: 488 KIKNNECPYGFIQPDSLPFRFAS 556
           +  N E  YGF     L F  A+
Sbjct: 68  RTLNVEPLYGFNNSRPLEFHEAA 90


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 302  LTLDSMKVIAESVGIATLGDDAAKELADDVTYR 400
            +TLD       +  + TL DD   EL DDV  +
Sbjct: 906  VTLDEFSAPLYATWLTTLDDDELSELTDDVVQK 938


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +2

Query: 353 LGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQKLSITDI-----DHALKIKNNECPYG 517
           LG  A K     +  +  V+   +  F+ +S +Q L ++ I     DHA    + +CP G
Sbjct: 712 LGPRAVKIYPITMKNQNTVLAVSSRTFLAYSYQQNLQLSPIAYSAIDHASSFASEQCPEG 771

Query: 518 FI 523
            +
Sbjct: 772 IV 773


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,078
Number of Sequences: 5004
Number of extensions: 40353
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)