Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14m15
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581...    78   6e-15
11_06_0500 + 24362627-24362828,24363046-24363704,24364958-243653...    28   4.4  
10_06_0078 + 10416950-10417174,10417595-10417679,10417782-104179...    28   4.4  
06_02_0107 - 11904636-11904699,11904940-11905013,11905671-119058...    28   4.4  
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314...    28   5.9  

>01_05_0080 -
           17957276-17957676,17957810-17957921,17958001-17958126,
           17958199-17958331,17960069-17960193,17960314-17960409,
           17960430-17960621,17960694-17960800,17961318-17961426,
           17961538-17961624,17963017-17963103,17964254-17964379
          Length = 566

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 39/83 (46%), Positives = 55/83 (66%)
 Frame = +2

Query: 311 DSMKVIAESVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQKLSITDIDHALK 490
           ++++VI +SVGIA L  D +  LA DV YRL+ I+Q+A+K M H+KR  L+  D+D AL 
Sbjct: 7   ETIEVIGQSVGIANLPADVSAALAPDVEYRLREIMQEAIKCMRHAKRTVLTADDVDSALS 66

Query: 491 IKNNECPYGFIQPDSLPFRFASG 559
           ++N E  YGF   D L F+ A G
Sbjct: 67  LRNVEPVYGFASGDPLRFKRAVG 89


>11_06_0500 +
           24362627-24362828,24363046-24363704,24364958-24365300,
           24366227-24366645
          Length = 540

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 92  YLSTLINFTLSQQEKIRNKKLKINPKNTVIQGV 190
           YL +  NF  +Q  KIRN+ L+I   + + QGV
Sbjct: 378 YLKSQFNFCRTQAWKIRNEILRIGGSDEMQQGV 410


>10_06_0078 +
           10416950-10417174,10417595-10417679,10417782-10417900,
           10418200-10418287,10419400-10419452,10419876-10420015,
           10420094-10420166,10420243-10420311,10420632-10420844,
           10422304-10422498,10422581-10422658,10423456-10423590
          Length = 490

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 26/106 (24%), Positives = 45/106 (42%)
 Frame = +2

Query: 188 VYRNRNQFGDKSLFNAVVNVSKDLISIMGDSELAYGSSLTLDSMKVIAESVGIATLGDDA 367
           V+ N+ Q  ++ L  AV+           D +L  GS   L   K  AE +G    G   
Sbjct: 69  VFYNKAQVNNRDLSIAVLRSFISRRREEHDIQLRRGSHAELPP-KHHAEELGHIR-GSSE 126

Query: 368 AKELADDVTYRLKVIVQDAMKFMHHSKRQKLSITDIDHALKIKNNE 505
            K L+++++YR   +++        + R  L +  I   + + NNE
Sbjct: 127 DKALSEEISYRAPKVLEALAASGLRAIRYALEVDGIGEVIAVDNNE 172


>06_02_0107 -
           11904636-11904699,11904940-11905013,11905671-11905802,
           11910309-11911018,11911110-11911852,11911936-11913753,
           11914037-11914338
          Length = 1280

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +2

Query: 347 ATLGDDAAKELADDVTYRLKVIVQDAMKFM-----HHSKRQKLSITDIDHALKIKNNE 505
           ATLGDD  KE+ + +   + ++ QD ++ +     H  + QKL    +  A++   N+
Sbjct: 390 ATLGDDQTKEIMEQIKGIIHLVKQDILEEIQAIKSHGPREQKLGHDQVVSAIQDAKNK 447


>02_01_0432 -
           3144560-3144655,3144792-3144832,3145019-3145094,
           3145465-3145542,3146121-3146208,3146613-3146686,
           3147445-3147579,3147699-3147770,3148239-3148325,
           3148418-3148522,3149028-3149085,3149576-3149634,
           3149960-3150056,3150217-3150317,3150443-3150487,
           3150619-3150681,3151082-3151147,3151286-3151342,
           3151570-3151656,3152063-3152239,3152413-3152625
          Length = 624

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +2

Query: 65  IRVHRYIPTYLSTLINFTLSQQEKIRNKKLKINPKNTVIQGVYRNRNQFGDKS 223
           +++  Y+P     L+NFTL++ E++R    K+   +  ++ V R   QF  +S
Sbjct: 303 MKLEYYLPIRCK-LVNFTLARFEELREALEKLQLNDAALKAVTRFSMQFEPES 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,038,185
Number of Sequences: 37544
Number of extensions: 223544
Number of successful extensions: 482
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)