Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14m15
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           35   6e-04
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.5  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 34.7 bits (76), Expect = 6e-04
 Identities = 18/73 (24%), Positives = 40/73 (54%)
 Frame = +2

Query: 302 LTLDSMKVIAESVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQKLSITDIDH 481
           +T  +++ +A   G+  +     +E    +   L+ +++DA+ +  H+KR+ ++  D+ +
Sbjct: 30  ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHTKRKTVTAMDVVY 89

Query: 482 ALKIKNNECPYGF 520
           ALKI+     YGF
Sbjct: 90  ALKIQGRTL-YGF 101


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 328 SRECWYRHSWR 360
           S +C++R SWR
Sbjct: 84  SMDCYFRQSWR 94


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 215 DKSLFNAVVNVSKDLISIMGDSELAYGSSLT 307
           DK+ F   V     L+ + GD  + YG   T
Sbjct: 126 DKNSFLHDVTERNKLVRLSGDGSVTYGMRFT 156


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 559 SRCEPKWQRIRLNKSIWTLIVFYLQGMIYI 470
           +RC  KW  I     I T++ F L   I I
Sbjct: 209 ARCSMKWTLIEHAFEISTMLFFVLPMTIII 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,819
Number of Sequences: 438
Number of extensions: 2843
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)