Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14m06
         (423 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ989011-1|ABK97612.1|  467|Anopheles gambiae gustatory receptor...    24   2.6  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    22   8.0  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    22   8.0  

>DQ989011-1|ABK97612.1|  467|Anopheles gambiae gustatory receptor 22
           protein.
          Length = 467

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 131 NPRQRHQAED*LKIYNRLH 187
           NP QR Q ED  +I  +LH
Sbjct: 19  NPNQRQQLEDRRRIKEQLH 37


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 125 WQNPRQRHQAED*LKIYNRL 184
           W NP  +   +D L  YNRL
Sbjct: 31  WANPDAKRLYDDLLSNYNRL 50


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 252 QNVTSRRTICVTGFEWW 302
           QN++S R+I  T FE W
Sbjct: 214 QNISSSRSIEKTPFELW 230


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 385,772
Number of Sequences: 2352
Number of extensions: 6996
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 35060166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)