Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14m01
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    30   0.49 
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.5  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    26   8.1  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   8.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   8.1  

>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 138 KKFIINHNHEQVDETNKQEVVDKTDATTYNS 230
           KKF++NH+   +D+ +    V   D T Y++
Sbjct: 183 KKFVVNHSETDIDKNDNHVSVQTEDGTIYHA 213


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 45  VKYHMPLHYQCDINADKNV-VNAYDAIDVDPNKKFIINHNHEQVDETNKQEVVDKTDATT 221
           VKYH P         ++ V  N YD +  +PN   II    +  DE N  + ++  D   
Sbjct: 198 VKYH-PTEVHPSWTVEEPVHYNTYDGVVNEPNSSVIIEELDDDYDELN--DPMNNNDTPI 254

Query: 222 YNS 230
            NS
Sbjct: 255 TNS 257


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 140 FVGVNIDSVIRIYNVFICVNVTLIM 66
           F  +N D+ I IY+ F+C +  LIM
Sbjct: 330 FPTLNPDAYIYIYSYFLCKDTVLIM 354


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 3    ETFNMDSSNCIKIDVKYHMPLHYQCDINADKNVVNAYDAIDVDPNKKFIINHNHEQVDET 182
            ET+ M+ +N     VK    + YQ +I+     V  +  ++VDP+K    +     +D T
Sbjct: 839  ETYQMEITN-----VKRFKLIIYQRNIHTGLETVYGHATLEVDPDKLKQGHGKDVWLDIT 893

Query: 183  NKQEVV 200
            NK +++
Sbjct: 894  NKGQIL 899


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 665  STRKASSVLKKQVTSFLKLSFEKPMDVLFXGSXFTRXIXPRK 790
            +TR  S  +K  +    +LSF+ P+D++     F     P K
Sbjct: 1991 NTRINSKSVKMSLKDHFRLSFDDPVDLVIPAKSFLDITLPAK 2032


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,198
Number of Sequences: 5004
Number of extensions: 51580
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)