Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14m01
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    32   0.47 
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    31   1.4  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    31   1.4  
AC084159-1|AAK39368.1|  223|Caenorhabditis elegans Hypothetical ...    29   5.7  
AF016438-3|AAQ62456.1|  173|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 185 VCFIDLFVIMINYKFFVGVNIDSVIRIYNVFICVNVTLIM*RHMV 51
           VC I    + INY    G  +     I+NV ICV ++L+    MV
Sbjct: 208 VCLIAAVYVFINYAIGDGCGLPKFFVIFNVLICVAISLLSVSPMV 252


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -2

Query: 468  RFTSRILRVKHDQEMTSFVSQN*T 397
            RF S+ L VKHDQE  SF+  N T
Sbjct: 2039 RFASKALCVKHDQEHASFLDSNGT 2062


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -2

Query: 468  RFTSRILRVKHDQEMTSFVSQN*T 397
            RF S+ L VKHDQE  SF+  N T
Sbjct: 2039 RFASKALCVKHDQEHASFLDSNGT 2062


>AC084159-1|AAK39368.1|  223|Caenorhabditis elegans Hypothetical
           protein Y73B3A.21 protein.
          Length = 223

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 831 KKXXXPXFFKTGPRXRGXIXRVNXDPXKRTSIGFSKLNLRXDVTCFFKTEL 679
           KK   P FF   P       +V   P    ++GF++ + R D   + K EL
Sbjct: 58  KKPEIPHFFAQNPLKNPSFPQVTIIPQTSAALGFAQYSPRDDKHLYSKDEL 108


>AF016438-3|AAQ62456.1|  173|Caenorhabditis elegans Hypothetical
           protein F44C8.9b protein.
          Length = 173

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 608 LSFEKQMTSPFRSCFNX*NSTRKASSVLKK-QVTSFLKLSFEKPMDVLF 751
           +SFE +  SPF++  +  +   KA+ + ++ +V  + K +   P+DV F
Sbjct: 118 ISFEPEKASPFKTVIDVTDLVHKAAEIFQEVKVIFWHKPTLHGPIDVFF 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,805
Number of Sequences: 27780
Number of extensions: 287065
Number of successful extensions: 517
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)