Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14l11
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    30   0.38 
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    29   1.2  
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    28   2.0  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   4.7  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    26   8.2  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   8.2  

>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +1

Query: 184 YVNYEKAVRVHVDVKYKTTYEQACINISKE---NRVKHGDPLYLSPQTILLDKIGVIQLF 354
           +V+  + ++ ++    + TY +A + I+K    N+V+H   LYL  Q IL D +  +   
Sbjct: 205 WVSILRRLQSNISTSERITYTKAILAIAKHHCWNKVEHSALLYLEHQLILYDTLTFVVHL 264

Query: 355 MRSK 366
           +  K
Sbjct: 265 LSQK 268


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
 Frame = +2

Query: 653 HTLARKLMKPELKPYRNSGEVYCTDFQ-----HXKRAPXSXLAPLLXKTKSVQFXFXLSV 817
           H LA+   +P L PY N   ++ T F+     H K+A  + L  ++ +   VQ    L  
Sbjct: 382 HALAKPFFRPSLVPYFNGLSIHLTGFKGEELSHLKKA-LTILGAVVHEFLGVQRSILLVN 440

Query: 818 QXXPRSVXXKFNL 856
              P S+  +F +
Sbjct: 441 TNEPFSMKTRFKI 453


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 148 KFVAKDIARSLKYVNYEKAVRVHVDVKYKTTYEQAC-INISKENRVKHGDPLYLSPQTIL 324
           +F+  D+ + +  ++   A  +   +  K TY+    +N     R+ H D   L PQ +L
Sbjct: 85  EFLDMDLKKYMDRISETGATSLDPRLVQKFTYQLVNGVNFCHSRRIIHRD---LKPQNLL 141

Query: 325 LDKIGVIQL 351
           +DK G ++L
Sbjct: 142 IDKEGNLKL 150


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 639 SVCSTYCIWSSSARPQF--RVASRPRQVCSLADLEQIPFGV 523
           SVC    +W++  + +F  +V  +PRQ    AD   +PF V
Sbjct: 455 SVCKD--LWANGIKAEFLYKVKPKPRQQFDAADKFDVPFAV 493


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 133  DEQPVKFVAKDIARSLKYVNYEKAVRVHVDVKYKT---TYEQACINISKENRVKHGDPLY 303
            +EQ V+FV++ +   L Y+ + K + +H D+K       ++  C  IS     KH D +Y
Sbjct: 928  EEQLVRFVSRQVLYGLSYL-HSKGI-IHRDLKADNLLIDFDGVC-KISDFGISKHSDNVY 984


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 144 GQVCGQGHCPQFKICKL*KGSTC 212
           G+ C    C   K CKL KGS C
Sbjct: 332 GEDCENNPCCDGKTCKLTKGSLC 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,847
Number of Sequences: 5004
Number of extensions: 58592
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)