Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14l11
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.6  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.6  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    23   4.9  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    23   4.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 363 QDAQRGGAAKLVLRTRVAPVHRV 431
           +D   GG A  + +T VAP+ RV
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERV 34


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 363 QDAQRGGAAKLVLRTRVAPVHRV 431
           +D   GG A  + +T VAP+ RV
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERV 34


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 462 RLGVLEQAQRRRGAL--GQHVFVKPILQLRRVVHLG 361
           +LG L+    +R  +  G  ++V+P+ ++  VVH G
Sbjct: 65  QLGCLKACVMKRIEMLKGTELYVEPVYKMIEVVHAG 100


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 462 RLGVLEQAQRRRGAL--GQHVFVKPILQLRRVVHLG 361
           +LG L+    +R  +  G  ++V+P+ ++  VVH G
Sbjct: 65  QLGCLKACVMKRIEMLKGTELYVEPVYKMIEVVHAG 100


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 612 SSSARPQFRVASRPRQVCSLADLEQIPFGVQQRRG 508
           +SS   + R+A     +C L  L   P+GV    G
Sbjct: 263 TSSQSAEIRIAKAAITICFLYVLSWTPYGVMSMIG 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,943
Number of Sequences: 438
Number of extensions: 4335
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)