Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14l09
         (245 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   0.60 
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    24   2.4  
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         23   5.6  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    23   7.4  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    23   7.4  

>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +3

Query: 48  MPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPXAY 161
           +P+G  P  +R N+C+ +     +     + P  P  Y
Sbjct: 155 VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGY 192


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 122 RVERHDGRENAAVNSHLSRRHTHGH*RH 39
           R   H   E     +H SRRH H H RH
Sbjct: 9   RTSTHKFNETDRETNH-SRRHRHHHSRH 35


>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 60 YPRALAPYCCRYKYGPR 10
          Y  +LA YC   KYG R
Sbjct: 10 YGSSLADYCLNAKYGQR 26


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -1

Query: 101 RENAAVNSHLSRRHTHGH*RHIVAVINMDHGNF 3
           + +     HL  R+  GH  HIV  I   H  F
Sbjct: 59  KNSVCATCHLDERYCPGHFGHIVLPIPAYHPLF 91


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 119 VERHDGRENAAVNSH 75
           +++HD +   A+NSH
Sbjct: 139 LDKHDSKNEVAINSH 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 922,894
Number of Sequences: 5004
Number of extensions: 13244
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)