Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14l09
         (245 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    19   6.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    19   9.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   9.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 8    CRGPYL*RQQYGANARGYGAATNE 79
            C    L  + YG NARG    T E
Sbjct: 1888 CDRDQLVNRNYGVNARGKDGMTTE 1911


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = -1

Query: 119 VERHDGRENAAVNSHLSRRHTHGH*RHIV 33
           V R   R+N     HL   H H    H +
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANHHAI 289


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +1

Query: 145 VRPXRIMTTDGLSATXTSSXVLKCQKWFCPFS 240
           VRP  +          T+  + K  ++F PFS
Sbjct: 339 VRPATVQYDTCCQGRATAIYIDKVSRFFFPFS 370


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = +3

Query: 21  IYNGNNMALMPVGMAPRQMRVNRCIFASIVSFDACI 128
           + N N   L+P+ M   +  +   +F S++   + I
Sbjct: 18  VNNSNYTELLPIDMRFNEGHIVSIVFYSVLMIISAI 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,448
Number of Sequences: 438
Number of extensions: 998
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)