Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14l04
         (317 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   6.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   6.3  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 312 FLLERDETNNPKL 274
           F L+ DE+ +PKL
Sbjct: 80  FFLKNDESESPKL 92


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 45  PESTSSIPPATFQLLPSIPYCTTTSGRF 128
           P+S  S   A   L+PS P C      F
Sbjct: 391 PKSIKSGDAAIVMLVPSKPMCAEAFQEF 418


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -2

Query: 58   DVDSGAYDRRNLEGQFL 8
            DV  G YD     G FL
Sbjct: 1268 DVSEGIYDGSGANGSFL 1284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,594
Number of Sequences: 438
Number of extensions: 1943
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)