Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14k24
(532 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 30 0.19
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 1.7
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 27 2.3
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 26 4.0
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 4.0
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 26 4.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.0
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 25 5.3
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 25 5.3
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.0
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 25 9.3
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 30.3 bits (65), Expect = 0.19
Identities = 22/79 (27%), Positives = 42/79 (53%)
Frame = +1
Query: 172 FTPIEDSAGLVFERMYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKN 351
+T +++ L+FER +R D+ V V KF+F S LQE+ ++ +K + + + +N
Sbjct: 264 YTNVQNEYELMFERDTEIRKAEDQTAVPVAKFSFVS-LQEVGDV-AKDAVIDV-IGVLQN 320
Query: 352 VRQIKQNRSSNIKTRIEKQ 408
V ++Q S +K+
Sbjct: 321 VGPVQQITSRATSRGFDKR 339
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.1 bits (57), Expect = 1.7
Identities = 23/90 (25%), Positives = 37/90 (41%)
Frame = +1
Query: 190 SAGLVFERMYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQ 369
S LVF YG R T + + S E++ +K K E AQ+S +N+ Q
Sbjct: 592 SIHLVFRSAYGDREITRRTDPLPSRSIYFSENVEMDLVKRKEEQLNAQLSQLENL----Q 647
Query: 370 NRSSNIKTRIEKQLQFLTPLNKNFXTYSVE 459
N ++ ++ + L+ N T E
Sbjct: 648 NEERKLQEKVNEHESLLSRTNDILSTLRKE 677
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 163 RITFTPIEDSAGLVFERMYGLRHHTDER 246
RI F P+ED + +VF ++ ++ DE+
Sbjct: 290 RIVFRPVEDHSHIVFAQLTHYKNKKDEK 317
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 17 YVSS*YISRTCWLANSVNIRRLSWTV*SCW 106
+V++ +I T W NS N RR S + S W
Sbjct: 247 FVNTGFIDSTNWFLNSFNQRRNSLQLYSSW 276
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 4.0
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 214 MYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKT 393
MY + H TD + V NF + L+ +E + +++ +++ KQ+ + N
Sbjct: 686 MYIVTHETDWKVVQYILINFTNQLRNTKMFTKTVEALQLLLNSLRDIINGKQSLNINFSD 745
Query: 394 --RIEKQLQFLTPL 429
RIE L L+ +
Sbjct: 746 FFRIEDLLVSLSKI 759
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 45 HVGLLIQSISDVYHGRCKVAGDVRANNFVIDD 140
+ L++ SI D HGR + D++ N ++DD
Sbjct: 203 YAALIVDSI-DYMHGRGVIHRDLKPENILLDD 233
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +1
Query: 262 KFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNF 441
K ++ + ++N+K K E EAQ + + +N ++ + + + K + + L N
Sbjct: 709 KLEAKNLREVIDNLKGKHETLEAQRNDLHSSLSDAKNTNAILSSELTKSSEDVKRLTANV 768
Query: 442 XTYSVEDSHFKQ 477
T + + KQ
Sbjct: 769 ETLTQDSKAMKQ 780
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 374 DRVTSKPALKSSCSF*RRLTKISSHTLWKTAIS 472
D V P K CS+ R I LW+T I+
Sbjct: 56 DEVYKNPKTKLCCSYVIRKALIRKEYLWRTVIT 88
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 226 RHHTDERFVFVKKFN-FASVLQELNNI 303
R T+ERF+F K N F S++Q NI
Sbjct: 254 RSETEERFLFTKTCNVFRSLIQIQKNI 280
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +1
Query: 139 TNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTDERFVFVKKFNFASVLQEL 294
+ T++GR IT PI+ + + Y H+ + KF+++ L++L
Sbjct: 25 SQTIIGRTDITVNPIDSNLQKIVLDCYQAEIHSVYVNGDLTKFSYSDALKKL 76
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 24.6 bits (51), Expect = 9.3
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 154 GRDRITFTPIEDSAGLVFERM-YGLRHHTDERFVFVKKFNFASVL 285
GRDR + + LV ERM Y ++ TD++ V + N+ S L
Sbjct: 599 GRDRNIDSSLSGKM-LVLERMLYQIKQETDDKIVLIS--NYTSTL 640
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,661
Number of Sequences: 5004
Number of extensions: 35522
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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