Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14k24
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    31   0.44 
04_03_0641 + 18261332-18262423                                         28   4.1  
01_05_0132 - 18446105-18446197,18446281-18446372,18446684-184467...    27   9.4  

>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
            26699321-26699416
          Length = 1515

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 286  QELNNIKSKIELYEAQVSTCKNVR-QIKQNRSSNIKTRIEKQLQFLTPLNKNFXTYS 453
            +E+  ++ KI+ Y  Q+++ +    QIK N  S   T +++  Q  +  NK+F  +S
Sbjct: 1342 REIQYLEQKIQKYSGQINSLEETLVQIKGNAESGTSTLVDQLDQLESHFNKSFSHFS 1398


>04_03_0641 + 18261332-18262423
          Length = 363

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -3

Query: 476 CLKWLSSTEYVXKFLLSGVKNC---SCFSMRVLMLLDLFCFICLTFLQVETCASYN 318
           C   LS  E++    +  VK     SC  + +L + +L  F CL  L++E+C + N
Sbjct: 216 CNALLSLDEFLMPAYMPVVKTILVESCRQLALLPIDELHRFSCLEVLRIESCPNLN 271


>01_05_0132 -
           18446105-18446197,18446281-18446372,18446684-18446783,
           18446855-18447046,18447216-18447536,18447848-18447943,
           18448006-18448098,18448181-18448306,18448358-18449053,
           18449130-18449162
          Length = 613

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 355 RQIKQNRSSNIKTRIEKQLQFLTPLNKNFXTYSVEDSHFKQR 480
           RQ+++   S I  +I +  Q   P+N+N   + +   H KQR
Sbjct: 500 RQLEKGYISRITNQIAQNEQIFIPINRNKNHWYLAVVHVKQR 541


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,923,873
Number of Sequences: 37544
Number of extensions: 205107
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)