Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14k24
(532 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U48436-1|AAC82513.1| 1311|Homo sapiens fragile X mental retardat... 30 4.4
L76569-1|AAA99416.1| 1276|Homo sapiens fragile X E mental retard... 30 4.4
AJ001550-1|CAA04822.1| 1272|Homo sapiens FMR2 protein protein. 30 4.4
AF012624-1|AAB71534.1| 1311|Homo sapiens familial mental retarda... 30 4.4
AB102644-1|BAC81113.1| 1272|Homo sapiens FMR2 protein. 30 4.4
BC132683-1|AAI32684.1| 1301|Homo sapiens AFF2 protein protein. 30 5.8
BC113055-1|AAI13056.1| 266|Homo sapiens SPAG5 protein protein. 29 7.7
BC000322-1|AAH00322.1| 1193|Homo sapiens sperm associated antige... 29 7.7
AL137585-1|CAB70827.1| 1027|Homo sapiens hypothetical protein pr... 29 7.7
>U48436-1|AAC82513.1| 1311|Homo sapiens fragile X mental retardation
protein FMR2p protein.
Length = 1311
Score = 30.3 bits (65), Expect = 4.4
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 64 SQYQTFIMDGVKL-LGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTD 240
S T +MD L + + A + LLS+++T V R ++TF +A + L+H D
Sbjct: 1028 STITTGLMDSSHLEMTSWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKAD 1087
Query: 241 ERF-VFVKKFNFA 276
F F K N+A
Sbjct: 1088 ALFEKFGKAVNYA 1100
>L76569-1|AAA99416.1| 1276|Homo sapiens fragile X E mental retardation
syndrome protein protein.
Length = 1276
Score = 30.3 bits (65), Expect = 4.4
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 64 SQYQTFIMDGVKL-LGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTD 240
S T +MD L + + A + LLS+++T V R ++TF +A + L+H D
Sbjct: 993 STITTGLMDSSHLEMTSWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKAD 1052
Query: 241 ERF-VFVKKFNFA 276
F F K N+A
Sbjct: 1053 ALFEKFGKAVNYA 1065
>AJ001550-1|CAA04822.1| 1272|Homo sapiens FMR2 protein protein.
Length = 1272
Score = 30.3 bits (65), Expect = 4.4
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 64 SQYQTFIMDGVKL-LGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTD 240
S T +MD L + + A + LLS+++T V R ++TF +A + L+H D
Sbjct: 989 STITTGLMDSSHLEMTSWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKAD 1048
Query: 241 ERF-VFVKKFNFA 276
F F K N+A
Sbjct: 1049 ALFEKFGKAVNYA 1061
>AF012624-1|AAB71534.1| 1311|Homo sapiens familial mental retardation
protein 2 protein.
Length = 1311
Score = 30.3 bits (65), Expect = 4.4
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 64 SQYQTFIMDGVKL-LGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTD 240
S T +MD L + + A + LLS+++T V R ++TF +A + L+H D
Sbjct: 1028 STITTGLMDSSHLEMTSWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKAD 1087
Query: 241 ERF-VFVKKFNFA 276
F F K N+A
Sbjct: 1088 ALFEKFGKAVNYA 1100
>AB102644-1|BAC81113.1| 1272|Homo sapiens FMR2 protein.
Length = 1272
Score = 30.3 bits (65), Expect = 4.4
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 64 SQYQTFIMDGVKL-LGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTD 240
S T +MD L + + A + LLS+++T V R ++TF +A + L+H D
Sbjct: 989 STITTGLMDSSHLEMTSWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKAD 1048
Query: 241 ERF-VFVKKFNFA 276
F F K N+A
Sbjct: 1049 ALFEKFGKAVNYA 1061
>BC132683-1|AAI32684.1| 1301|Homo sapiens AFF2 protein protein.
Length = 1301
Score = 29.9 bits (64), Expect = 5.8
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 64 SQYQTFIMDGVKL-LGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTD 240
S T +MD L + + A + LLS+++T V R ++TF +A + L+H D
Sbjct: 1018 STITTGLMDSSHLEMMSWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKAD 1077
Query: 241 ERF-VFVKKFNFA 276
F F K N+A
Sbjct: 1078 ALFEKFGKAVNYA 1090
>BC113055-1|AAI13056.1| 266|Homo sapiens SPAG5 protein protein.
Length = 266
Score = 29.5 bits (63), Expect = 7.7
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +1
Query: 283 LQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFXTYSVED 462
++E + +E AQ+ CK + + +S + T + QLQ L ++ +
Sbjct: 131 IEEKQEVSRVLEQVSAQLEECKGQTEQLELENSRLATDLRAQLQILANMDSQLKELQSQH 190
Query: 463 SHFKQ 477
+H Q
Sbjct: 191 THCAQ 195
>BC000322-1|AAH00322.1| 1193|Homo sapiens sperm associated antigen 5
protein.
Length = 1193
Score = 29.5 bits (63), Expect = 7.7
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +1
Query: 283 LQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFXTYSVED 462
++E + +E AQ+ CK + + +S + T + QLQ L ++ +
Sbjct: 684 IEEKQEVSRVLEQVSAQLEECKGQTEQLELENSRLATDLRAQLQILANMDSQLKELQSQH 743
Query: 463 SHFKQ 477
+H Q
Sbjct: 744 THCAQ 748
>AL137585-1|CAB70827.1| 1027|Homo sapiens hypothetical protein
protein.
Length = 1027
Score = 29.5 bits (63), Expect = 7.7
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +1
Query: 283 LQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFXTYSVED 462
++E + +E AQ+ CK + + +S + T + QLQ L ++ +
Sbjct: 518 IEEKQEVSRVLEQVSAQLEECKGQTEQLELENSRLATDLRAQLQILANMDSQLKELQSQH 577
Query: 463 SHFKQ 477
+H Q
Sbjct: 578 THCAQ 582
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,751,519
Number of Sequences: 237096
Number of extensions: 1101684
Number of successful extensions: 2290
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2289
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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