Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14k21
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0285 + 6894899-6895114,6896197-6896422,6896889-6896992,689... 28 3.7
12_02_0617 + 21256745-21256943,21257454-21257647,21257836-212580... 27 4.9
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210... 27 4.9
04_04_1158 - 31342934-31343272,31343508-31343658,31343745-313439... 27 6.5
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 27 6.5
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733 27 8.6
04_04_1159 - 31352922-31353098,31354117-31354267,31354581-313548... 27 8.6
04_03_0387 - 15251816-15251905,15251999-15252069,15252098-152523... 27 8.6
01_06_1388 + 36957588-36957703,36957825-36957987 27 8.6
01_03_0229 + 13995610-13995844,13996391-13996445,13998126-139982... 27 8.6
>09_02_0285 +
6894899-6895114,6896197-6896422,6896889-6896992,
6897121-6897239,6897445-6897634
Length = 284
Score = 27.9 bits (59), Expect = 3.7
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +2
Query: 191 IMKRQYVFMSMSNTKRRMSKHVLISAKKIALNTAIRCICHPK----QYYSTK*ALYSCSC 358
+ +R+YV +S+T S H+L+ A+ I + + C+ + + +S Y C
Sbjct: 156 VKQRKYVICVLSSTIGSKSSHLLLLAQSIRICNLVGCVPYGRGRRCNTFSLSKNAYCNHC 215
Query: 359 APRCTTRRSCK 391
RRS K
Sbjct: 216 LDEIMRRRSRK 226
>12_02_0617 +
21256745-21256943,21257454-21257647,21257836-21258042,
21258115-21258232,21258325-21258401,21258513-21258692,
21259312-21259356,21260309-21260413,21261115-21261261
Length = 423
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 256 INISKENRVKHGDPLYLSPQTILLDKIGVIQLFMRSKMHNAAELQNWFYEH 408
+ I++E+ VK DP P TI KIG +QL R H L+N Y++
Sbjct: 61 VKIAREDVVKEEDPTNNVPDTI-YSKIG-LQLHRRDN-HPLGILKNTIYDY 108
>04_04_1156 -
31319747-31320085,31320556-31320706,31320795-31321026,
31321121-31321331,31321646-31321764,31321835-31322032,
31322163-31322364,31322456-31322832,31322937-31323007,
31326264-31326329,31326414-31326479,31326761-31326835,
31326944-31327018,31327115-31327186,31327683-31327904,
31328012-31328083,31328425-31328496,31329410-31329481,
31329716-31329896,31332132-31332237
Length = 992
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 127 LGDEQPVKF-VAKDIARSLKYVNYEKAVR-VHVDVKYKTTYEQACIN 261
L + P +F + IAR L Y++ E ++R VH D+K A +N
Sbjct: 757 LNIDWPARFGICLGIARGLAYLHEESSIRVVHRDIKASNVLLDAYLN 803
>04_04_1158 -
31342934-31343272,31343508-31343658,31343745-31343976,
31344173-31344284,31344572-31344690,31344772-31344936,
31345049-31345247,31345351-31345733,31345838-31345902,
31346003-31346047,31346402-31346467,31346707-31346778,
31346907-31346981,31347086-31347157,31347255-31347326,
31347954-31348022,31348109-31348180,31348280-31348351,
31348756-31348827,31349295-31349366,31349528-31349711,
31350082-31350220
Length = 948
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 127 LGDEQPVKF-VAKDIARSLKYVNYEKAVRV-HVDVKYKTTYEQACIN 261
L + P +F + IAR L Y++ E ++RV H D+K A +N
Sbjct: 713 LNIDWPARFEICLGIARGLAYLHEESSIRVIHRDIKASNVLLDANLN 759
>04_04_1155 -
31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 127 LGDEQPVKF-VAKDIARSLKYVNYEKAVR-VHVDVKYKTTYEQACIN 261
L + P +F + IAR L Y++ E ++R VH D+K A +N
Sbjct: 686 LNIDWPARFDICLGIARGLAYLHEESSIRVVHRDIKASNVLLDANLN 732
>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
Length = 329
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 357 ALQDAQRGGAAKLVLRTRVAPVHRV 431
A D GGAA +V +T APV RV
Sbjct: 24 AAADFAMGGAAAVVAKTGAAPVERV 48
>04_04_1159 -
31352922-31353098,31354117-31354267,31354581-31354812,
31354902-31355112,31355791-31355909,31355994-31356176,
31356283-31356481,31356636-31357015,31357127-31357191,
31357925-31357990,31358427-31358501,31358781-31358852,
31359318-31359386,31359476-31359547,31359658-31359729,
31360126-31360230,31360282-31360353,31361053-31361230,
31361707-31361791
Length = 860
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 142 PVKF-VAKDIARSLKYVNYEKAVR-VHVDVKYKTTYEQACIN 261
P +F + IAR L Y++ E ++R VH D+K A +N
Sbjct: 684 PARFEICLGIARGLAYLHEESSIRVVHRDIKASNVLLDANLN 725
>04_03_0387 -
15251816-15251905,15251999-15252069,15252098-15252323,
15252344-15252496,15252570-15252656,15252745-15252948,
15253038-15253159,15253354-15253507,15254329-15254434,
15254507-15254617,15256468-15256622
Length = 492
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 85 QFKFGQDEFTLRYVLGDEQPVKFVAKDIARSLKYV 189
Q QD T +G Q VKF AK + ++ +YV
Sbjct: 43 QLALRQDASTFGETIGSAQDVKFDAKTLTQAHRYV 77
>01_06_1388 + 36957588-36957703,36957825-36957987
Length = 92
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 206 YVFMSMSNTKRRMSKHVLISAKKIALNTAIRCICHP 313
Y M+ SN R++ H + + ++ ++ CIC P
Sbjct: 50 YPSMTRSNRAYRLATHAWLGPGQFSVESSSACICKP 85
>01_03_0229 +
13995610-13995844,13996391-13996445,13998126-13998211,
13999484-13999671,14000111-14000169,14000618-14000646,
14000742-14001138,14001569-14002028
Length = 502
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 294 IAVFNAIFFADINTCLLIRRFVFDIDMNTYCL-FIIYIF 181
+A F ++ +I CLLI R + D T C+ FII IF
Sbjct: 78 LAPFGSLLQCNIIFCLLISRVMDDTICITVCMNFIISIF 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,734,547
Number of Sequences: 37544
Number of extensions: 196802
Number of successful extensions: 521
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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