Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14k20
(400 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 146 1e-36
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 29 0.35
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 0.81
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 27 1.4
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 26 2.5
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 3.3
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom... 25 4.3
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 5.7
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 25 5.7
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 24 7.6
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 24 7.6
SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 24 7.6
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 24 10.0
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 146 bits (354), Expect = 1e-36
Identities = 61/107 (57%), Positives = 84/107 (78%)
Frame = +2
Query: 80 MSLYXFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 259
M+ FK I +P F+D++LS+TQRKTPTV+ +KISRIRGFY RKVK+TQ +
Sbjct: 1 MATAVFKNITPIPDVNTFLDVVLSRTQRKTPTVIRSGFKISRIRGFYGRKVKFTQDTITE 60
Query: 260 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLID 400
+L I+QEFPKL+D+HPF+ADL+N+LYD+DH K+ L QL+TA+HL++
Sbjct: 61 KLDSILQEFPKLNDIHPFHADLLNILYDRDHLKIALSQLSTAKHLVE 107
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 28.7 bits (61), Expect = 0.35
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +2
Query: 50 DTKIALN*NKMSLYXFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRK 229
+TK+ LN ++S+ FKK + A D +K + P V+++H F +
Sbjct: 298 ETKVYLNNERISISGFKKYVEMYLASD------TKPDEEPPRVIYEHVNDRWDVAFAVSD 351
Query: 230 VKYTQQNFHDRLSRI 274
++ Q +F + +S I
Sbjct: 352 GQFKQVSFVNNISTI 366
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 0.81
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 101 KIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGF 217
KI VV + + + S+ QRK +++ KH I + GF
Sbjct: 1670 KIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGF 1708
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 217 KPTYS*YFIMLVNDCRSFPLCFR*N 143
+PTY+ YFI L++D R C+ N
Sbjct: 95 RPTYTHYFIRLLHDKRLLQKCYTQN 119
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 25.8 bits (54), Expect = 2.5
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = +2
Query: 77 KMSLYXFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIR-KVKYTQQNF 253
K++ FK IA + F+D +S R T + +++ GF +K + F
Sbjct: 547 KINTTTFKTIANNKSVDAFLDDCVSFFSRPEMT---QDSQLNASSGFLTNFSLKDSTDRF 603
Query: 254 HDRLS--RIIQEFPKLDDVHPFYADLMNVL 337
+ LS ++ + F K+DD + Y+D+ + L
Sbjct: 604 YKVLSYEKVSERFVKIDDSYITYSDIFSPL 633
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.4 bits (53), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 100 KDCCSPYS*GLYRHNFIEN 156
K SPYS G Y++N IEN
Sbjct: 501 KSSSSPYSRGPYKYNRIEN 519
>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 182 HKHYKISRIRGFYIRKVKYTQQNFHDRLSRI 274
H+H+K+SR R YI+ N D +++I
Sbjct: 230 HQHWKVSRDRKQYIKNFHNESVNNVDLINKI 260
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 24.6 bits (51), Expect = 5.7
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Frame = -1
Query: 244 LGI--FHFSNIKPTYS*YFIMLVNDCRSF 164
LGI FH KPT YF L C F
Sbjct: 1388 LGIARFHLKKFKPTDFDYFFQLAEFCMDF 1416
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 24.6 bits (51), Expect = 5.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 172 RSFPLCFR*NYVYKVLSCRDYSNLFKVVQTHF 77
++FP +V K++ +S++FK V HF
Sbjct: 31 QAFPTIEEDYHVVKLVGAGSFSSVFKAVDRHF 62
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 24.2 bits (50), Expect = 7.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 107 AVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRIIQEF 286
AV +DF +L TPT+ HY+ IR YI + F R+S + + F
Sbjct: 150 AVKDAIEDFRRTMLDIHLNNTPTLRLSHYQNPNIRTEYISYFR----RFKKRISALFRVF 205
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 24.2 bits (50), Expect = 7.6
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 197 ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLY 340
+S IR R+ K + LSR I + KLD V PF L+ Y
Sbjct: 437 LSTIRHVNTRESKINALSLVQILSRNICDESKLDTVLPFVMTLLRDQY 484
>SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 24.2 bits (50), Expect = 7.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 233 KYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNV 334
KY +N D RI+Q D+V+P D+ V
Sbjct: 95 KYVLENKDDMFWRIVQNSKTADEVNPDKYDIFFV 128
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 23.8 bits (49), Expect = 10.0
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +2
Query: 221 IRKVKYTQQNFHDRLSRIIQEFPKLDDV 304
+ KV + ++ HD +++Q K+D+V
Sbjct: 164 VAKVNFLSKHLHDNEEKLMQVNAKMDEV 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,548,922
Number of Sequences: 5004
Number of extensions: 29894
Number of successful extensions: 77
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -