Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14k19
         (261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   112   6e-27
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   108   1e-25
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.13 
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    28   0.24 
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   0.95 
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   1.3  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    24   3.8  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    24   3.8  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    24   3.8  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    24   3.8  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     23   5.1  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    23   5.1  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    23   6.7  
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    23   8.8  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    23   8.8  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    23   8.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    23   8.8  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  112 bits (270), Expect = 6e-27
 Identities = 49/71 (69%), Positives = 60/71 (84%)
 Frame = +2

Query: 44  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 223
           MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60

Query: 224 MFQLPKLYAKL 256
            + +PKLY KL
Sbjct: 61  EYTIPKLYIKL 71


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  108 bits (259), Expect = 1e-25
 Identities = 47/71 (66%), Positives = 59/71 (83%)
 Frame = +2

Query: 44  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 223
           MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60

Query: 224 MFQLPKLYAKL 256
            + +PK+Y KL
Sbjct: 61  EYAIPKIYVKL 71


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.13
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 125 RCVPKDKAIKKFVIRNIVEAAAVRDI 202
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 27.9 bits (59), Expect = 0.24
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -3

Query: 184 RFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASS 65
           + +DV + +L + + L   P+A+C  +S ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 256 ELSV*LRELEHWVYRGIVNISDRRRF 179
           +L+V L+E+E W+ + +  + D RRF
Sbjct: 229 DLTVALQEIESWINKDMGPLIDERRF 254


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 109 SHSFNVTTSMLGASSITAL---TSHVSNLRSGEQ 17
           +  FN+ TS   +SS+T+    +SH+SN  + ++
Sbjct: 97  ARDFNILTSNFASSSVTSAPTQSSHISNFTNSQK 130


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 190 RRRFYDVPNHELFDSLVLWHAPRA 119
           R  F +V N  L +S+ ++H PRA
Sbjct: 363 RNAFLNVANKYLPNSVCIYHVPRA 386


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 119  CARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 214
            C R  P  KA+    +RN +E A    I D +
Sbjct: 1214 CCRSSPMQKALMVQKVRNTLEKAVTLAIGDGA 1245


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 38  RNMTRKRRNGGRAKHG 85
           R   R RR  GRAKHG
Sbjct: 378 REARRMRRRQGRAKHG 393



 Score = 22.6 bits (46), Expect = 8.8
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = -3

Query: 205 VNISDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASSITALTSHVSNLRS 26
           +N   +R+   +PN   FDSL  + + R   +++  N++     +S   +  + ++N  S
Sbjct: 472 LNNFQQRKLTPLPNSMSFDSLNEFESERNTPSTYGQNISPLPQFSSPSLSSDAFLTNSNS 531

Query: 25  GE 20
            E
Sbjct: 532 SE 533


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 119 SLCISQL*RDHVHAWRVLHYGAYESCF*PPIR 24
           S C+ ++  +H+ A  ++HYG   +C  P  R
Sbjct: 91  SCCVDEVAAEHMSADAIVHYG--RACLSPTSR 120


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -3

Query: 181 FYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASSIT 59
           F D+   +L     LW   +A C+   FN+    + + S T
Sbjct: 224 FDDISYSKLIADFQLWMTFKAECSEEKFNIVNGDIHSWSRT 264


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 157 LFDSLVLWHAPRAVCASHSFNVTTSMLGASSITALTSH 44
           LFDS ++    ++  A HS N+T  +    SI + + H
Sbjct: 516 LFDSEIVQSESKSTEALHSGNLTEHLKTVESILSKSRH 553


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 131 VPKDKAIKKFVIRNIVEAAAVRDINDASV 217
           +PKDKA++    RN  +  A   I DA +
Sbjct: 167 IPKDKAVENNHQRNAEKPVASDKITDAKL 195


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 86  VHAWRVLHYGAYESCF 39
           VHA RVL Y   E CF
Sbjct: 117 VHANRVLKYLGIEDCF 132


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 205 VNISDRRRFYDVPNHELFDSLVLW 134
           +++ D +RF D  ++   D +V+W
Sbjct: 556 IDVQDWKRFTDYRSYTETDDIVIW 579


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -3

Query: 136  WHAPRAVCASHSFNVTTSM 80
            WH  ++VC ++S + +T++
Sbjct: 944  WHLVKSVCVNNSADTSTNL 962


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 193 DRRRFYDVPNHELFDSLV 140
           D R  + +P HELF +L+
Sbjct: 522 DERSLFKIPYHELFCALL 539


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 954,163
Number of Sequences: 5004
Number of extensions: 14945
Number of successful extensions: 32
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)