Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14k19
(261 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474... 117 1e-27
07_03_0361 + 17215312-17216217 28 1.2
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 27 1.6
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399... 27 1.6
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832 27 2.7
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486... 27 2.7
03_02_0054 + 5292167-5292336,5292434-5292526,5292828-5293003,529... 27 2.7
03_06_0101 + 31653860-31654327 26 4.8
01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436 26 4.8
06_03_0803 + 24737115-24737366,24738921-24739004,24739152-247392... 25 6.3
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 25 6.3
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004 25 6.3
11_06_0012 + 19251085-19251666 25 8.4
11_04_0358 + 16725417-16725422,16725789-16725858,16727825-167286... 25 8.4
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 25 8.4
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 25 8.4
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 25 8.4
01_05_0587 + 23452275-23453759 25 8.4
>01_06_1177 +
35147036-35147038,35147128-35147220,35147322-35147406,
35147588-35147760
Length = 117
Score = 117 bits (281), Expect = 1e-27
Identities = 50/72 (69%), Positives = 61/72 (84%)
Frame = +2
Query: 44 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 223
MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+
Sbjct: 1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60
Query: 224 MFQLPKLYAKLH 259
+ LPKLYAK+H
Sbjct: 61 GYVLPKLYAKVH 72
>07_03_0361 + 17215312-17216217
Length = 301
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +2
Query: 11 RSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAA 190
R+ +G+E T K++ GG G G + V+ + +A K+ ++ +VE AA
Sbjct: 47 RAAVSGTEQAPETTKKKGGGG---GGGDERVVQVHSAEELDGALRAAKERLV--VVEFAA 101
Query: 191 VRDINDASVYP 223
+N + +YP
Sbjct: 102 SHSVNSSRIYP 112
>09_04_0042 -
14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 199 ISDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASSITALTSHVSNLRS 26
+S+ R NH D+ H P A+C HS ++ + LG+ +T ++L+S
Sbjct: 622 VSEHREVESPANHIKGDNSFHSHHPNALCNVHSVSLGNN-LGSMGVTPYYDPCNSLQS 678
>08_02_1601 -
28138206-28138597,28138928-28139054,28139150-28139914,
28140714-28140929,28141433-28141903
Length = 656
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 211 GIVNISDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFN--VTTSMLGASSIT 59
GI + D +YD + LF+ L+ P A +SH+F+ V T + S+ T
Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYT 491
>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
Length = 433
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +2
Query: 47 TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVR 196
T RR A G G AV C +CA P + A+ + + A R
Sbjct: 78 TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAVSDHLDGCLAAAGGAR 127
>05_01_0554 +
4856131-4856605,4858051-4858098,4860611-4860792,
4861409-4863136
Length = 810
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 193 DRRRFYDVPNHELFD 149
DR FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368
>03_02_0054 +
5292167-5292336,5292434-5292526,5292828-5293003,
5293076-5293122,5293732-5293801,5293960-5294186,
5294274-5294327,5294470-5294545,5294679-5294884
Length = 372
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = -3
Query: 88 TSMLGASSITALTSHVSNLRSGEQ 17
+SML +S+++++S +SNLRS +Q
Sbjct: 164 SSMLRRASVSSISSFLSNLRSHDQ 187
>03_06_0101 + 31653860-31654327
Length = 155
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 83 GRGHVKAVR-CTNCARCVPKDKAIKKFVIRNIVEAAAVR 196
GR VR T CARCVP D A V AA++R
Sbjct: 20 GRARDMYVRGMTGCARCVPADAAFGYPVFVPSSAAASMR 58
>01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436
Length = 86
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 8 RRSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFV 163
++S F G + R+G +A H R +AV+ T + + DK + KF+
Sbjct: 4 KQSQFKGQGKKKTIPPNRHG-KAPHVRKGKRAVKPTKFTKDMDADKELTKFI 54
>06_03_0803 +
24737115-24737366,24738921-24739004,24739152-24739255,
24739321-24739445,24739549-24739707,24740120-24740237,
24740317-24740851,24740948-24741042,24741153-24741431,
24741478-24741592,24741669-24741855,24741934-24742490
Length = 869
Score = 25.4 bits (53), Expect = 6.3
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -3
Query: 151 DSLVLWHAPRAVCASHSFNVTTSMLGASSITALTSHVSNLRSGEQRTAEK 2
D L L H + + A H ++T MLG S A SHV +G Q A K
Sbjct: 131 DMLRLHH--QMLTAVHDGSLTNWMLGLSMEKAEASHVYTYSNGFQGFAAK 178
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 5 FRRSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVR 109
+RRS ++ V R+RR+ +HGR + R
Sbjct: 322 YRRSSYSSRNVDRQGRERRDRDSDRHGRSSARRSR 356
>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
Length = 578
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 11 RSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCAR 127
RSLF +T+ R+NG HG+G R + R
Sbjct: 512 RSLFPNDLAIAITKDRQNGAFKPHGKGRKAGKRVYDIKR 550
>11_06_0012 + 19251085-19251666
Length = 193
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 11 RSLFTGSEVRNMTRKRRNGGRAKHGRG 91
R+ T E + R+RR+GGR G G
Sbjct: 69 RTTATAVEAQQALRRRRHGGRRDSGGG 95
>11_04_0358 +
16725417-16725422,16725789-16725858,16727825-16728693,
16729109-16729198,16730071-16730356,16730573-16730592
Length = 446
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 2 LFRRSLFTGSEV--RNMTRKRRNGGRAKHGRGHV 97
+F R ++ + + RN+T+K RN G +G G V
Sbjct: 349 IFHRKVYPENTLLTRNLTKKSRNRGATDNGGGAV 382
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 25.0 bits (52), Expect = 8.4
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -3
Query: 169 PNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASSITALTSHVSNLRSGEQRTAEK 2
P +F L+ + RA + + TT + G+ SI A R+ EQR AEK
Sbjct: 785 PIASIFHRLLCGRSERADARGQTLD-TTPLPGSDSIEANRRRERGQRALEQRLAEK 839
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 115 KLRAVRAKGQGYQKVRD*EHRRSGGGQR 198
K ++ R K +G +K R EH R GG+R
Sbjct: 105 KTQSDRDKDKGKEKERMEEHERRPGGER 132
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 65 GGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAV 193
GG A+ V VRC C +C A K F + ++ A V
Sbjct: 5003 GGEAEQRAVFVDEVRCVGCLKCAL--YANKTFAVESVYGRARV 5043
>01_05_0587 + 23452275-23453759
Length = 494
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -3
Query: 229 EHWVYRGIVNISDRRRFYDVPN--HEL 155
+HW Y ++N +D+R + +V N HEL
Sbjct: 204 DHWAYFKMMNDADQRSYGEVFNSFHEL 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,981,310
Number of Sequences: 37544
Number of extensions: 126496
Number of successful extensions: 382
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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