Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14k19
         (261 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   117   1e-27
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    29   0.60 
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    29   0.60 
AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical ...    27   1.8  
AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical ...    27   1.8  
AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical ...    27   2.4  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z50739-3|CAA90603.2|  286|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AC025715-7|AAK68443.1|  178|Caenorhabditis elegans Hypothetical ...    25   7.4  
AC024793-2|AAT39976.1|  338|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    25   9.8  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      25   9.8  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  117 bits (282), Expect = 1e-27
 Identities = 54/72 (75%), Positives = 57/72 (79%)
 Frame = +2

Query: 44  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 223
           MT KRRN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 224 MFQLPKLYAKLH 259
            + LPKLY KLH
Sbjct: 61  QYALPKLYHKLH 72


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 92  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAA 187
           H+K ++C NC+     +K+++  +IR+  E A
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDA 111


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 92  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAA 187
           H+K ++C NC+     +K+++  +IR+  E A
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDA 229


>AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical
           protein Y51A2A.11 protein.
          Length = 193

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 35  VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 136
           +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 83  IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 116


>AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical
           protein Y51A2A.7 protein.
          Length = 260

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 35  VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 136
           +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 150 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 183


>AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical
           protein Y105C5B.1 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 157 LFDSLVLWHAPRAVCASHSFNVTTSMLGASSITALTSHVSN 35
           L D LV W+  R V A     + T  L A  +  L  HVSN
Sbjct: 2   LMDGLV-WNGNREVSAGRLDTLNTFFLNALELILLIIHVSN 41


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 238  RELEHWVYRGIVNISDRRRFYDVPN--HELFDSL 143
            + +  W YR  V +   RRF+D P+  H+ F  L
Sbjct: 932  KPMRRWRYRTDVYVDGTRRFFDKPHWKHQQFKHL 965


>AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical
           protein F29A7.1 protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 95  VKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASV 217
           V   R  N   C+   K IK+F ++ I  AA  R + +  V
Sbjct: 129 VSVYRTMNEGNCINASKVIKEFRVKTIRLAACSRSLEEKIV 169


>Z50739-3|CAA90603.2|  286|Caenorhabditis elegans Hypothetical
           protein F13D2.4 protein.
          Length = 286

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 49  SHVSNLRSGEQRTAEK 2
           SH+++LRSGE+R  EK
Sbjct: 262 SHLTHLRSGERRPPEK 277


>AC025715-7|AAK68443.1|  178|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.2 protein.
          Length = 178

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 208 IVNISDRRRFYDVPNHELFDSLVLW 134
           I++I+    FY V   E+ DSLV+W
Sbjct: 33  IISIAPLYLFYGVHQMEIQDSLVVW 57


>AC024793-2|AAT39976.1|  338|Caenorhabditis elegans Hypothetical
           protein Y48G1BL.7 protein.
          Length = 338

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +2

Query: 2   LFRRSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 136
           LF RS F G    N T ++  G    H    +   R     +C+P
Sbjct: 23  LFNRSFFNGYCSNNATWQQSQGESDSHVANSLDLCRGDGVKQCIP 67


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 196  SDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSML 77
            S RR + +  N+EL D +  +     V A   +N+  S+L
Sbjct: 2330 STRRTYEEQLNNELLDVVTTFGGASNVSADKKYNILASIL 2369


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 196  SDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSML 77
            S RR + +  N+EL D +  +     V A   +N+  S+L
Sbjct: 2330 STRRTYEEQLNNELLDVVTTFGGASNVSADKKYNILASIL 2369


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 196  SDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSML 77
            S RR + +  N+EL D +  +     V A   +N+  S+L
Sbjct: 2330 STRRTYEEQLNNELLDVVTTFGGASNVSADKKYNILASIL 2369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,402,608
Number of Sequences: 27780
Number of extensions: 92024
Number of successful extensions: 235
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)