Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14k17
         (411 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967...    28   3.3  
01_06_0579 + 30379243-30379617                                         27   4.4  

>08_02_1540 +
           27694565-27694579,27696364-27696447,27696599-27696731,
           27696840-27696951,27697530-27697629,27697810-27697937,
           27698046-27698115,27698548-27698636,27698719-27698764,
           27698854-27698924,27699002-27699075,27699341-27699433,
           27699539-27699572,27699704-27699789,27702147-27702223,
           27702445-27702533,27702630-27702813,27703068-27703249,
           27703962-27704064,27704159-27704490,27704577-27705018,
           27705749-27705846,27706988-27707081,27707666-27707787,
           27708025-27708078,27708185-27708304,27708595-27708799,
           27708889-27709059,27709155-27709310,27709375-27709431,
           27709474-27709580,27709708-27709798,27709931-27710072,
           27710149-27710305,27710400-27710516,27710596-27710722,
           27710844-27711066,27711460-27711466,27711656-27711788
          Length = 1574

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 253 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWP 351
           W+  E   Q+++P   ++  L  H+G+  C++WWP
Sbjct: 86  WKIPELHGQSNSPPLEQLFTLDEHTGKIRCVLWWP 120


>01_06_0579 + 30379243-30379617
          Length = 124

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 312 TPLRRKSVPHLVAVHSASMYAGSD 383
           +P+RR S PH +A  S+ ++ G D
Sbjct: 17  SPMRRSSSPHRLASSSSDLHGGDD 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,064,625
Number of Sequences: 37544
Number of extensions: 205840
Number of successful extensions: 431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)