Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14k17
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   9.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   9.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   9.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 310 LPHSGENPCLIWWPSIQQACTQDPTQ 387
           +P   +NP +  W     AC+  P Q
Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPPRQ 398


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +1

Query: 91  EKIYEKTQEL*SGQRSDAFLQIQD 162
           +++ ++T +L   + +DAF  +QD
Sbjct: 380 DRLMDETNQLTLQETADAFKDLQD 403


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/44 (20%), Positives = 14/44 (31%)
 Frame = -2

Query: 176 PSCGTSWIWRNASLRCPDHXXXXXXXXXXXSPHLQVRQQAWPPL 45
           P C   W W   +    +H             +LQ  ++ W  L
Sbjct: 53  PVCNGLWRWIRLTYGQTNHISLTLDLEYELVENLQANEKPWSTL 96


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/44 (20%), Positives = 14/44 (31%)
 Frame = -2

Query: 176 PSCGTSWIWRNASLRCPDHXXXXXXXXXXXSPHLQVRQQAWPPL 45
           P C   W W   +    +H             +LQ  ++ W  L
Sbjct: 91  PVCNGLWRWIRLTYGQTNHISLTLDLEYELVENLQANEKPWSTL 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,089
Number of Sequences: 438
Number of extensions: 1899
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)