Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14k16
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0965 + 21915842-21916906                                         28   4.2  
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007           28   4.2  
08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675     27   7.3  

>10_08_0965 + 21915842-21916906
          Length = 354

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 111 ELFSNRWLSKLRSSWFSLMWGTLFSA 34
           E +SNRW S+  S W S  W + + A
Sbjct: 283 ERWSNRWSSRWSSRWSSGRWSSRYDA 308


>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
          Length = 952

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 337 WIRNGXFWIVHDDHWDLCAIVSVVGLIYFIIAIQF 233
           W RNG FW+       L A++ VV  + F   I F
Sbjct: 774 WFRNGQFWMTASCSAYLAAVLQVVTKVVFRRDISF 808


>08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675
          Length = 264

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 386 HGILAFSSSTPIIMASPTKSTKS 454
           HG+    SS+P++++SP++ T S
Sbjct: 179 HGLAREESSSPVVISSPSRCTSS 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,994,774
Number of Sequences: 37544
Number of extensions: 125428
Number of successful extensions: 224
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)