Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14k16
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   6.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   6.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.5  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 193 VISNSNPNYCIFM*TVSL 246
           VI +  P YC+F  TV+L
Sbjct: 523 VIGHRMPRYCLFGNTVNL 540


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 193 VISNSNPNYCIFM*TVSL 246
           VI +  P YC+F  TV+L
Sbjct: 523 VIGHRMPRYCLFGNTVNL 540


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 245 YYKINKPNDAH 277
           YYK+NK +DA+
Sbjct: 73  YYKLNKIHDAY 83


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 140 LFYLVLELSLN 108
           +FYL++E SLN
Sbjct: 147 MFYLIIECSLN 157


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 258  ISPTTLTIAQRSQ*SS*TIQNXP 326
            I+PTT+T +Q       TIQ  P
Sbjct: 1277 IAPTTITSSQSPGNQQQTIQTQP 1299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,230
Number of Sequences: 438
Number of extensions: 1724
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)