Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14k13
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    28   0.83 
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   3.3  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   4.4  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    25   4.4  

>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -1

Query: 312 PKSRIRAVMTASMRMITLVFSRSTSRHISKARGFIPILILSTRSEVVNKKK*ITQNWPNY 133
           P+   R V   +  +     SRS+S H  K+     +  ++++ E ++    + Q+ PN 
Sbjct: 136 PEQNTRPVSEVNASLDLNTASRSSSAHSVKSTSSATVTNVTSKKEAISATTSLAQSSPNL 195

Query: 132 ISLN*Q 115
            SL+ Q
Sbjct: 196 ASLSKQ 201


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 242 VDLENTSVIILIDAVMTARILDLGVCCNYHRRYRAVCRKSKTPTPQDVSWHSS 400
           +DL  T   +LID +   R    GV  + ++R    C     PT ++V + +S
Sbjct: 664 LDLAATEETVLIDHIDLIRRKGFGVAIDLNQRVGNRCTLLSVPTSKNVIFDTS 716


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 371 TPQDVSWHSSVEPLFXT*LYS*DREINDHFTGT 469
           +P ++S HS+ +PL  T + S   +  D F+G+
Sbjct: 80  SPPELSVHSAQQPLIPTSIASSSAQTGDTFSGS 112


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 293 ARILDLGVCCNYHRRYRAVCRKSKTPTPQDVS 388
           A +L+  +C NYH+R  AV      P   D +
Sbjct: 214 AGLLEEDLCANYHKRLEAVSLDFLPPAYNDTA 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,477
Number of Sequences: 5004
Number of extensions: 32858
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)