Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14k13
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0635 + 35210755-35210855,35210938-35211088,35211171-352113...    28   4.4  
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692     27   5.8  

>03_06_0635 +
           35210755-35210855,35210938-35211088,35211171-35211341,
           35211864-35212043,35213174-35213303,35213580-35213749
          Length = 300

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -1

Query: 318 QTPKSRIRAVMTASMRMITLVF--SRSTSRHISKARGFIPILILSTRSEVVNKKK*ITQN 145
           ++P+ ++  +M+    +  L+   S S  R +S A  F+PILI  T  E V +    +  
Sbjct: 154 KSPREKLSCIMSCCQVINNLLLNVSMSNDRTLSGADDFLPILIYITIKESVFQTHMESAR 213

Query: 144 WPNYISL 124
             N+IS+
Sbjct: 214 LGNHISV 220


>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
          Length = 455

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 305 DLGVCCNYHRRYRAVCRKSKTP 370
           DL  C +YHRR++     SKTP
Sbjct: 126 DLSKCRDYHRRHKVCEAHSKTP 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,076,258
Number of Sequences: 37544
Number of extensions: 186763
Number of successful extensions: 437
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)