Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14k13
         (471 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.7  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   6.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   6.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.8  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 137 LGQFCVIYFFLLTTSLLV 190
           +G+  +I FF+LTT L++
Sbjct: 1   MGRITIIRFFVLTTMLMM 18


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +2

Query: 149 CVIYFFLLTTSLLVDNIRIGIKPRAFEI*RDVD 247
           C+++F +    + V  IRIG++ ++  +  +V+
Sbjct: 210 CILFFLIPMVFIAVLYIRIGLRIQSDSLAENVE 242


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 338 SDDDNCNKLLN 306
           S  DNCNK+ N
Sbjct: 118 SGSDNCNKIYN 128


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 338 SDDDNCNKLLN 306
           S  DNCNK+ N
Sbjct: 118 SGSDNCNKIYN 128


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 300 IRAVMTASMRMITLVFSRSTSRHISKARGFIPILILSTR 184
           I  ++T ++ ++TLV +          +  +  L+LSTR
Sbjct: 35  ILCILTLALTLVTLVRAEDIFEDGKSDKEILDNLLLSTR 73


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 300 IRAVMTASMRMITLVFSRSTSRHISKARGFIPILILSTR 184
           I  ++T ++ ++TLV +          +  +  L+LSTR
Sbjct: 35  ILCILTLALTLVTLVRAEDIFEDGKSDKEILDNLLLSTR 73


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 300 IRAVMTASMRMITLVFSRSTSRHISKARGFIPILILSTR 184
           I  ++T ++ ++TLV +          +  +  L+LSTR
Sbjct: 35  ILCILTLALTLVTLVRAEDIFEDGKSDKEILDNLLLSTR 73


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 300 IRAVMTASMRMITLVFSRSTSRHISKARGFIPILILSTR 184
           I  ++T ++ ++TLV +          +  +  L+LSTR
Sbjct: 35  ILCILTLALTLVTLVRAEDIFEDGKSDKEILDNLLLSTR 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,494
Number of Sequences: 438
Number of extensions: 2452
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)