Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14k10
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   3.8  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   3.8  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    25   5.1  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   6.7  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   6.7  
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po...    25   6.7  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   8.9  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   8.9  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 270 KHSNTVE*RRRCDVFYNHLSHTTTFSDA 187
           K+    E RR C++  +HL + + FS+A
Sbjct: 189 KYQRKTEFRRLCELLRSHLGNASKFSNA 216


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 182 IKASEKVVVWER--WL*KTSHLRRYSTVFECLN 274
           +K  E   +W R  WL K  HLRR +   +C++
Sbjct: 721 VKHHEHWKLWARKNWLPKKLHLRRVNDTMQCVS 753


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 356 LLFDQVFLTGPAVYEVTSGASHNTDSSHSST 264
           LL   +  TGPA     + A+HNTD SH  T
Sbjct: 306 LLNSHLLETGPA----NANANHNTDLSHDPT 332


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 23  DRDRRVHKKILYKIVSTNFVRQRSNHVTFLLPTYKSQIPKLI 148
           D D R+H  I+ +++ST      SN + F +P  K+   K++
Sbjct: 385 DDDIRMHGMIMAEVISTYSGVSLSNPLAFDVPIMKTTKAKVL 426


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 349 NSNNSYDGYDEIPISTLMFTLVNVIESVE*SNGFFKSIFYAIFLSFLNN 495
           +   + D YD +PIS L++ L ++      +NG   S  +A + S L++
Sbjct: 662 DQTKAIDSYDHVPISPLIYLLHSLALL---TNGTLFSTVHAAYSSILSS 707


>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 205

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 33 DVCTKKFFTKLYRPTSFDN 89
          +V TK +F ++Y PT F+N
Sbjct: 31 NVFTKGYFPQVYEPTIFEN 49


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/37 (21%), Positives = 23/37 (62%)
 Frame = +2

Query: 320  QLVPSKKLDQIVTTATMGMMKYLYPRSCSPWLMLLSQ 430
            +++ +KK+D+ +  + +    ++YP + S W +L ++
Sbjct: 1285 EVLLTKKIDESMIKSLLQRFLHVYPFAASSWTLLTNR 1321


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 332 SKKLDQIVTTATMGMMKYLYPRSCSPWLMLLSQ*SEAMASLN 457
           S  + +IVT+  M +   L P  C+  + LLS+   A  ++N
Sbjct: 363 SFSMSEIVTSMQMSISSSLSPDQCAKAIELLSKALPAWCTIN 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,986
Number of Sequences: 5004
Number of extensions: 43659
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)