Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14k10
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910           30   0.96 
03_02_0589 + 9673928-9674123,9674557-9674713,9675588-9675669,967...    28   3.9  
04_04_1132 - 31129968-31130469,31131072-31131415                       28   5.1  

>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
          Length = 1155

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -1

Query: 274 IQALEYS*ITPQM*RFLQPSFPHYHFF*CLNTITNI-HLHLKHNQF 140
           ++ L+Y  ++  + +       +  FF C+NT++N+ HL L HN++
Sbjct: 621 LKKLQYLNLSDLLNKKCHDKSTYVSFFECINTLSNLEHLDLSHNEY 666


>03_02_0589 +
           9673928-9674123,9674557-9674713,9675588-9675669,
           9675759-9675806,9676566-9676666,9676871-9676979,
           9677004-9677093
          Length = 260

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -3

Query: 455 LKKPLLHSTDSITLTRVNMSVDIGISSYPS*LLLLFDQVFLTGPAVYEVTSGASHNTD 282
           LK  ++H  D   L+  ++ +D     YP   LL F  V L   AV +   G  +  +
Sbjct: 87  LKTDIIHHLDKSELSLDDVKIDYNRGYYPVGALLRFSSVPLFNTAVRQTREGRQYRLE 144


>04_04_1132 - 31129968-31130469,31131072-31131415
          Length = 281

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 22/70 (31%), Positives = 30/70 (42%)
 Frame = +2

Query: 200 VVVWERWL*KTSHLRRYSTVFECLNGTSRYYARRRMLLRTQLVPSKKLDQIVTTATMGMM 379
           VV WE W   T  +   S  + C +GTSRY   R   +    V +  LD     A +G +
Sbjct: 167 VVRWELW--GTPRVPWES--YGCFSGTSRYKVDRNGKIYEHKVDNLALDFPRPAAKVGSI 222

Query: 380 KYLYPRSCSP 409
             +   SC P
Sbjct: 223 ADIVVASCPP 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,971,722
Number of Sequences: 37544
Number of extensions: 241976
Number of successful extensions: 461
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)