Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14k04
         (279 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   2.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   3.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   4.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   6.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   8.6  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     19   8.6  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 45  STCKTQSRDDVICFSKLNLRNDVICFSK-LNSLYE 146
           S C   ++    C + LN    +ICFSK L+ +YE
Sbjct: 116 SECINANKSTDKCENGLNF---IICFSKLLSDMYE 147


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 88   EKQMTSSLDCVLHVEFY 38
            +K +T+++DC    E+Y
Sbjct: 956  KKHITTTIDCSTQSEYY 972


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 63  SRDDVICFSKLNLRNDVICFSKLNSL 140
           S DD     KLN+    + FSKL S+
Sbjct: 281 SYDDTDGDGKLNVNEFYMAFSKLYSV 306


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -3

Query: 277 FFFNIVNVMCNQCVFYNK 224
           F  N+ +  C+QC++  K
Sbjct: 352 FVVNLWSGFCSQCIWQEK 369


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 11  CHLFKLALRVEFYV*NTI 64
           C +F  A  VEF   NTI
Sbjct: 301 CTIFLFAAMVEFAFVNTI 318


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 200 FILVNDIIP*LCFTRRILLVKRVQF 126
           FIL N+II  +  T  I+L K V F
Sbjct: 205 FILNNEIIRSIQGTGTIILKKTVCF 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,442
Number of Sequences: 438
Number of extensions: 762
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)