Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14j20
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   6.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 541 VAIFQHGRRSAPFMCPDSRDAS 476
           VA ++H RR   F   +S DAS
Sbjct: 25  VAGYKHSRRHRDFTVAESYDAS 46


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 442 KTNGCYR*REFKKRLGCRDT*KVPNGVRVEKLRPNM 549
           K+N C +  E K+R    D  K+    R++  + N+
Sbjct: 113 KSNVCLKFEEQKRRKKSLDDVKILRNDRIDSYKSNL 148


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 15/73 (20%), Positives = 30/73 (41%)
 Frame = -1

Query: 295 KLKQVFSSFNGSKLPSSLKTLIIVFNTSCVKIIELTTPGNWWYRLSVSSNTS*PGSRICT 116
           K ++V  +    + P+++ T +   +     +I+     N W  LSVS         +  
Sbjct: 716 KHEEVSRTSTAGQFPTNVATTVTSMSIDQSTVIQTGANVNLWQPLSVSIPPPPSAQNVPQ 775

Query: 115 NASTLSTCSITIL 77
           N ++ +   I IL
Sbjct: 776 NTNSQAIPRIPIL 788


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,213
Number of Sequences: 438
Number of extensions: 3289
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)