Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14j18
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   1.9  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   4.4  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    25   5.8  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    24   7.7  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    24   7.7  

>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +3

Query: 117 MPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 230
           +P+G  P  +R N+C+ +     +     + P  P  Y
Sbjct: 155 VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGY 192


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 316 SSSKMGKTIFDILKRLMRWLLQINHPSS 233
           +S K+GK   +IL  L+R     NHP S
Sbjct: 528 NSGKLGKNYTNILCLLLRLRQACNHPQS 555


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 69  HKIAVVHIYNGNNMALMP 122
           HKI  VHIY+ +N+ L P
Sbjct: 23  HKIKEVHIYDFDNVRLNP 40


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = -3

Query: 239 VVMIRVGRTR*LVCYARVERHDGRENAAVNSHLSRRHTHGH*RHIVAVINMDHGNFMIEK 60
           +V++ V + + +  Y ++  +D  E   + S LSRR      +HI    N       ++K
Sbjct: 19  LVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHIRVGRNEVVVVLRVDK 78

Query: 59  EISY 48
           E  Y
Sbjct: 79  EKGY 82


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -3

Query: 191 RVERHDGRENAAVNSHLSRRHTHGH*RH 108
           R   H   E     +H SRRH H H RH
Sbjct: 9   RTSTHKFNETDRETNH-SRRHRHHHSRH 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,634,388
Number of Sequences: 5004
Number of extensions: 30864
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)