Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14j18
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0156 - 15282111-15282752,15284787-15285719                       27   7.3  
06_03_0784 - 24557089-24557198,24557296-24560725                       27   7.3  
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240...    26   9.7  

>10_08_0156 - 15282111-15282752,15284787-15285719
          Length = 524

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 54  DFFLNHKIAVVHIYNGNNMALMPVGMAPRQMR 149
           D FL+  I V+  + GN+MA  P G   RQ+R
Sbjct: 106 DRFLSTTIGVI-TFGGNDMAFAPYGERWRQLR 136


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 189 ACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDE--DDNQFKMTIARHLVGN 362
           A + Y      D Y    W IC SH+  + +++K +L   D+  D   F  ++ +  + N
Sbjct: 228 AQLIYNDKRIEDNYDLRAW-ICVSHVFDKVRITKEILTSIDKTIDLTNFNFSMLQEELKN 286

Query: 363 KERGIKRILI 392
           K +  K +L+
Sbjct: 287 KVKMKKFLLV 296


>07_03_1764 +
           29322683-29323387,29323809-29323889,29323968-29324072,
           29324453-29325382,29326728-29326856,29326953-29327042,
           29327237-29327293,29327362-29327394
          Length = 709

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 222 DAYHDDGWFICNSH 263
           D+YHDDG  +C+ H
Sbjct: 325 DSYHDDGASLCSKH 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,462,135
Number of Sequences: 37544
Number of extensions: 199899
Number of successful extensions: 416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)