Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14j18
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z50874-11|CAA90766.1|  259|Caenorhabditis elegans Hypothetical p...    27   6.7  
U39855-5|AAA81084.1|  118|Caenorhabditis elegans Hypothetical pr...    26   8.8  

>Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical
           protein C32H11.4 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 123 VGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYH 233
           +GM P  + + + +FA+  S D    + SP  P+ Y+
Sbjct: 146 IGMQPHVLNITQDLFAADFSSDKVALFVSPADPNDYY 182


>Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical
           protein F01D5.3 protein.
          Length = 132

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 144 MRVNRCIFASIVSFDACITYKSPCSPDAYHD--DGWFICNSHLIKRF 278
           M +   I    VS  AC    +PC  D Y D  D   +CN+ + K F
Sbjct: 1   MLLQSSILLLSVSLAACQISTAPCQDDPYTDCRDYAALCNNPMYKNF 47


>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 265 SSNVLKCQKWFCP 303
           ++N+LK  KWFCP
Sbjct: 130 ATNILKLNKWFCP 142


>Z50874-11|CAA90766.1|  259|Caenorhabditis elegans Hypothetical
           protein R10E4.5 protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 289 KWFCPFSTKTTINSK*RSLGI*LEIKKEVSSEF 387
           ++ CP ST   + S+       +E+K+EV  EF
Sbjct: 200 RFTCPSSTAKNVKSETEETSTSIEVKQEVEDEF 232


>U39855-5|AAA81084.1|  118|Caenorhabditis elegans Hypothetical
           protein F18G5.1 protein.
          Length = 118

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 126 PRALAPYCCRYKYGP-RQFYD*ERNLL 49
           PR ++ Y  ++KYGP RQ+ D E   L
Sbjct: 44  PRRISIYAPKFKYGPNRQYSDDENETL 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,081,277
Number of Sequences: 27780
Number of extensions: 177868
Number of successful extensions: 422
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)