Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14j17
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    26   2.8  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   3.8  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   5.0  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   6.6  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.7  

>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 221 QDSTLTGVTCLNMFEVQQKKHDADQN 298
           +D+   G+TCL ++E+Q  +H   +N
Sbjct: 105 EDTVEAGLTCLYIYEIQLDEHIRGRN 130


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 337  YAAFTLLWRTTTSILICIMFFLL 269
            YA   LLW +   +L+C+M  L+
Sbjct: 968  YATDNLLWASLEGMLLCVMAILI 990


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 258 CSKYSKKNMMQIRILVV--VRHKSVNAAYVSRVITSLLPRWKI*ATKKSVTSYVLAHV 425
           C KYSKKN   + I +V  ++  S++A  +    TS   R +I  T K V+ ++  H+
Sbjct: 23  CFKYSKKNTRLVFIFIVKMLKQLSISAGNLLNKGTSETLRNEI--TTKKVSIHLPKHL 78


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -1

Query: 175 TPSKTMSLFDS*FNQQYVILTIHFNTCPTLT-STYNSH 65
           T + +++  DS  N+  ++ T+HF+  P+L+ S+  SH
Sbjct: 51  THNSSVAYVDSQDNKPPLVSTLHFSLAPSLSPSSAQSH 88


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 401  DGFLRGSDLPSR*QRRYYTTY 339
            +G L G  LP++  +R YTT+
Sbjct: 1364 NGILEGKPLPTKSTKRSYTTF 1384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,412
Number of Sequences: 5004
Number of extensions: 30600
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)