Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14j17
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879     29   1.2  
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252...    28   2.8  
04_04_0339 - 24513699-24516827                                         27   6.5  

>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
          Length = 696

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 290 DQNTSSGTPQERECSIRKSCN-NVSVTSMEDLSHEE 394
           D   SSG+P   E S+ K C+ ++S TS  D  ++E
Sbjct: 525 DMQASSGSPDGSEPSVNKICDGSISWTSRNDFEYKE 560


>03_05_0650 -
           26423829-26424179,26424379-26424612,26424961-26425236,
           26425372-26425648,26425751-26425764,26425843-26425989,
           26426306-26426366,26426570-26426604,26426688-26426882,
           26428230-26428439,26428865-26428940,26429519-26429799
          Length = 718

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 284 DADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEIRHILRS 415
           DAD + SSG    +E + + + +++S  ++E L    +RH +RS
Sbjct: 647 DADASGSSGESSCKEDTNQPTTSDISHPTLEGLPVNRLRHAVRS 690


>04_04_0339 - 24513699-24516827
          Length = 1042

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 396 ISSWLRSSIEVTETLLHDLRMLHSRSCGVPLLV 298
           ++ W+++S E+   L+   +M+    CGVP L+
Sbjct: 321 LTQWMQNSAELPPRLIPIRKMIADTCCGVPSLL 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,563,280
Number of Sequences: 37544
Number of extensions: 181858
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)