Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14j17
(433 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82288-2|CAB05319.1| 485|Caenorhabditis elegans Hypothetical pr... 29 1.9
AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical... 29 1.9
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical... 29 1.9
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 28 3.3
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 28 3.3
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 27 4.4
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 27 4.4
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 27 4.4
M37232-1|AAA28119.1| 251|Caenorhabditis elegans myosin I protein. 27 4.4
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 27 5.8
>Z82288-2|CAB05319.1| 485|Caenorhabditis elegans Hypothetical
protein ZK896.4 protein.
Length = 485
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 139 IRNQKVTSFYLVFNKIMSTFKPTSEVRSGLYS 234
+ +Q SFYLV+N I + + P ++ R G ++
Sbjct: 338 VLDQDQASFYLVYNAIKAGWSPAAQGRRGFFA 369
>AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical
protein Y110A7A.9b protein.
Length = 908
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 176 STR*CLPLSLHQK*DQDSTLTGVTCLN---MFEVQQKKHDADQNTSSGT 313
ST+ LSLHQ S +GVTC+ M E+ + ++D NT+ GT
Sbjct: 252 STKSIGELSLHQLSQMGSLSSGVTCVRMRPMDELTKVENDPFANTALGT 300
>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
protein Y110A7A.9a protein.
Length = 1019
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 176 STR*CLPLSLHQK*DQDSTLTGVTCLN---MFEVQQKKHDADQNTSSGT 313
ST+ LSLHQ S +GVTC+ M E+ + ++D NT+ GT
Sbjct: 363 STKSIGELSLHQLSQMGSLSSGVTCVRMRPMDELTKVENDPFANTALGT 411
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -1
Query: 403 VTDFFVAQIFHRGNRDVITRLTYAAFTLLWRTTTSILICIMFFLLYFEHVQTRHASESRV 224
V DF FH N T L + F LW + L+CI + F HV+ ++ + ++
Sbjct: 43 VRDFCEQTTFHGVNMIFTTSLYWVRF--LWVVVS--LVCICLCMYSFSHVKDKYDRKEKI 98
Query: 223 L 221
+
Sbjct: 99 V 99
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -1
Query: 403 VTDFFVAQIFHRGNRDVITRLTYAAFTLLWRTTTSILICIMFFLLYFEHVQTRHASESRV 224
V DF FH N T L + F LW + L+CI + F HV+ ++ + ++
Sbjct: 43 VRDFCEQTTFHGVNMIFTTSLYWVRF--LWVVVS--LVCICLCMYSFSHVKDKYDRKEKI 98
Query: 223 L 221
+
Sbjct: 99 V 99
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 118 LTIHFNTCPTLTSTYNSH*ITQRNKDIVSAPGKR 17
+ IHFN TL S H + ++++ I APG+R
Sbjct: 246 IRIHFNKHGTLASCDIEHYLLEKSRVIRQAPGER 279
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 118 LTIHFNTCPTLTSTYNSH*ITQRNKDIVSAPGKR 17
+ IHFN TL S H + ++++ I APG+R
Sbjct: 246 IRIHFNKHGTLASCDIEHYLLEKSRVIRQAPGER 279
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 118 LTIHFNTCPTLTSTYNSH*ITQRNKDIVSAPGKR 17
+ IHFN TL S H + ++++ I APG+R
Sbjct: 246 IRIHFNKHGTLASCDIEHYLLEKSRVIRQAPGER 279
>M37232-1|AAA28119.1| 251|Caenorhabditis elegans myosin I protein.
Length = 251
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 118 LTIHFNTCPTLTSTYNSH*ITQRNKDIVSAPGKR 17
+ IHFN TL S H + ++++ I APG+R
Sbjct: 132 IRIHFNKHGTLASCDIEHYLLEKSRVIRQAPGER 165
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical
protein F58G4.1 protein.
Length = 1974
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 118 LTIHFNTCPTLTSTYNSH*ITQRNKDIVSAPGKRS 14
+ IHFNT + H + ++++ I APG+RS
Sbjct: 246 IRIHFNTGGKVAGADIEHYLLEKSRVIKQAPGERS 280
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,497,044
Number of Sequences: 27780
Number of extensions: 176042
Number of successful extensions: 445
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -