Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14j14
         (358 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical ...    27   5.1  
AC006641-5|AAF39825.1|  225|Caenorhabditis elegans Hypothetical ...    27   5.1  
AC006641-3|AAF39823.1|  284|Caenorhabditis elegans Hypothetical ...    27   5.1  
Z49913-2|CAA90143.1|  660|Caenorhabditis elegans Hypothetical pr...    26   8.9  

>Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical
           protein F49C5.3 protein.
          Length = 551

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 255 STSTSRHISK-ARGFIPLLILSTRSEVVNKKK*ITQNWPNYIS 130
           ST + RH  +  RG +  L  STR+  VNKKK    ++ N+ S
Sbjct: 21  STRSIRHKREDPRGKMKPLATSTRTSSVNKKKKNDDDYENFYS 63


>AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical
           protein Y48A6B.8 protein.
          Length = 551

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 255 STSTSRHISK-ARGFIPLLILSTRSEVVNKKK*ITQNWPNYIS 130
           ST + RH  +  RG +  L  STR+  VNKKK    ++ N+ S
Sbjct: 21  STRSIRHKREDPRGKMKPLATSTRTSSVNKKKKNDDDYENFYS 63


>AC006641-5|AAF39825.1|  225|Caenorhabditis elegans Hypothetical
           protein F45D11.12 protein.
          Length = 225

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 274 NDRACIFYIDVPSYFKSTWFYPTSDI 197
           N+R    Y+DVP + +  WF   +D+
Sbjct: 59  NNRYITTYVDVPGFTEKQWFKHITDV 84


>AC006641-3|AAF39823.1|  284|Caenorhabditis elegans Hypothetical
           protein F45D11.8 protein.
          Length = 284

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 274 NDRACIFYIDVPSYFKSTWFYPTSDI 197
           N+R    Y+DVP + +  WF   +D+
Sbjct: 67  NNRYITTYVDVPGFTEKQWFKHITDV 92


>Z49913-2|CAA90143.1|  660|Caenorhabditis elegans Hypothetical
           protein ZK938.3 protein.
          Length = 660

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 229 KSTWFYPTSDIIDQK*GS*QKEINNTE 149
           K+ +F+PTSD+ D K  +   ++NN E
Sbjct: 378 KTHFFFPTSDLTDIKPSALPIDLNNQE 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,747,314
Number of Sequences: 27780
Number of extensions: 107255
Number of successful extensions: 227
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)