Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14j11
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    68   8e-13
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    39   4e-04
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    29   0.47 
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   1.4  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   4.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   4.4  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   5.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   5.8  
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    25   7.7  

>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 68.1 bits (159), Expect = 8e-13
 Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
 Frame = +1

Query: 61  MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID--ATTAAFK 234
           MP+Y CDYC  +LTHDS SVRK H  GR H  NV+ YY K  +E+AQ  ++  A++   K
Sbjct: 1   MPRYLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQEEAQKQLEERASSGFLK 60

Query: 235 AG 240
            G
Sbjct: 61  KG 62


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 61  MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 165
           +PKYYC YC  ++  D+P  R++H    KH+D +K
Sbjct: 8   IPKYYCKYCQIFV-KDTPFARRSHEQTYKHQDAIK 41


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 85  CDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQK--WMEEQAQH 204
           CD  L H+ P + K++ T R H  + + ++Q+   +  Q QH
Sbjct: 89  CDQCLKHNIPCIYKSNSTKRSHSRHEEIHHQQQLHLNHQYQH 130


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 309 HYRRIPRWWYCSAFVAKWILSNF 241
           +Y+  P+WWY + F+  + L+ F
Sbjct: 527 NYKEAPQWWYATLFIVVFGLTIF 549


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 103 HDSPSVRKTHCTGRKHKDNV-KFYYQKWMEEQAQHL 207
           HDSPS+RK    G    D   K  Y   + ++A+HL
Sbjct: 467 HDSPSIRKLIDIGEIDFDQAFKICYDSNLLDEAKHL 502


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 23/88 (26%), Positives = 36/88 (40%)
 Frame = +3

Query: 192  TSTTSHRCNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTRWSSWYDTSSI 371
            TST S   +  G     + + S W     ++    S       TPTS +  SSW  +S +
Sbjct: 906  TSTGSETSSVVG-SGTDSATSSSWTAETSSSAITSSVAASV--TPTSSSSASSWSSSSEV 962

Query: 372  YGSWRSYGTTNDDGSTWANAANDGNETA 455
              S  +   T    S+ A A+  G+ T+
Sbjct: 963  DPS-TAASATGSSTSSIATASVSGSSTS 989


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 378 SWRSYGTTNDDGSTWANAANDGNETAYDGPH 470
           S+  +   NDD   WA AA D  E  +  P+
Sbjct: 101 SFEYFNLGNDDQGMWAAAAMDAAEANFSPPN 131


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 174 SEMDGGTSTTSHRCNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCT 338
           ++ +  TS T      S   +  N   S++ +   +TTT G FGN T + P++ T
Sbjct: 544 TQTNNATSNTGTGLFGSNNANTTNTGGSLFNKP--STTTGGLFGNTTAQQPSTTT 596


>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 148 HKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFGNKGTAIPPP 291
           HKD  + Y + W  +  + L        KA KIA  P      A+ PP
Sbjct: 15  HKDWQR-YVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEAIRPAVKPP 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,640
Number of Sequences: 5004
Number of extensions: 37044
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)