Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14i18
(384 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 28 0.44
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 27 0.76
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 26 1.8
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 25 3.1
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 24 7.1
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c... 24 7.1
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 24 7.1
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 24 9.4
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 24 9.4
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 24 9.4
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 28.3 bits (60), Expect = 0.44
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 105 RPQNRRSARTSLSDNAFPRFLLVITPP 185
RPQ +RS+ LS +AF +F+ +PP
Sbjct: 139 RPQAKRSSSRLLSTDAFSQFISSFSPP 165
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 27.5 bits (58), Expect = 0.76
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 150 HCLTKKFGH--FSYFEGEFLFLGTFTAKEIKKRAL 52
+ L GH S+ GE F GT+ A+E K RAL
Sbjct: 319 YMLAASLGHDRSSFLVGEAFFYGTYGARENKLRAL 353
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 94 PWNIHGKRNQKARSGKSLD-LLARESRKGRRE 2
PW + K K R GK+++ LL R+ +G+ +
Sbjct: 286 PWGVLAKGGYKTRRGKNVNKLLVRDRPRGKEK 317
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = -2
Query: 380 WKKRKHRPRREWPKRQKRLKAQFLP*IGHQKSSCKTPSTEGSE 252
WKK + + EW K ++ KA++ K+ K E E
Sbjct: 143 WKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKE 185
Score = 24.6 bits (51), Expect = 5.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 380 WKKRKHRPRREWPKRQKRLKAQF 312
WKK + + EW K ++ KA++
Sbjct: 121 WKKAREEDKAEWKKAREEDKAEW 143
Score = 24.6 bits (51), Expect = 5.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 380 WKKRKHRPRREWPKRQKRLKAQF 312
WKK + + EW K ++ KA++
Sbjct: 132 WKKAREEDKAEWKKAREEDKAEW 154
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 7.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 202 YPEEHKGGVITRRNRGKALSD 140
YP+EH+ GV++ G A+ D
Sbjct: 145 YPDEHENGVLSLPFSGSAVVD 165
>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 24.2 bits (50), Expect = 7.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 123 FSYFEGEFLFLGTFTAKEIKKRALVNHLICW 31
FSY LF F+ + + A V H+ICW
Sbjct: 85 FSYILPSKLFT-IFSRSLVNRSAAVVHVICW 114
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 24.2 bits (50), Expect = 7.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 25 LLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPELLCQTMLSLGF 165
L +D VIY F F C + +LK+ + E C+ +L F
Sbjct: 76 LTKSDAVIYLEDQFHFHCYDYYYTPIPSLKLKDSEENTCEMILHSSF 122
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 296 DLFMEEIVPLVVSAASAIPSLVDAFSSSK 382
D+F + +P++ ++A IPSL A SK
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSK 267
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 23.8 bits (49), Expect = 9.4
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 138 KKFGHFSYFEGEFLFLGTFTAKEIKKR-ALVNHLICWQESPER 13
KKF H +FE E+ + A+ IK R L C ES R
Sbjct: 521 KKFEHLPFFEAEWYRVILDEAQTIKNRNTLAARGCCLLESTYR 563
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 23.8 bits (49), Expect = 9.4
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 39 SSDLPERAF*FLLP*MFQGTKTRPQ-NRRSARTSLSDN 149
S D +A FLLP +F + T PQ N ++ ++LS N
Sbjct: 214 SGDAHLQASEFLLPNLFGNSSTSPQDNFGTSNSALSRN 251
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,381
Number of Sequences: 5004
Number of extensions: 32513
Number of successful extensions: 86
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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