Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14i18
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0175 + 22966151-22967614 31 0.31
10_08_0666 - 19691985-19692216,19692327-19692404,19692508-196928... 28 2.9
11_03_0002 - 8850264-8850418,8850645-8851772,8851895-8852399 27 3.8
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 27 5.1
02_05_0206 - 26773420-26773536,26773858-26773953,26774640-267747... 27 6.7
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 26 8.9
12_02_0253 + 16443738-16443923,16444319-16444559,16444603-164446... 26 8.9
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300... 26 8.9
02_05_0383 - 28497525-28497689,28497776-28497946,28498115-284983... 26 8.9
01_03_0287 - 14685536-14685697,14686536-14686686,14686778-146870... 26 8.9
>05_05_0175 + 22966151-22967614
Length = 487
Score = 31.1 bits (67), Expect = 0.31
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 307 HE*VIRNPVAKHPLQKDRKRGGRNECELIN--VGGRSYPEEHKGGVITRRNRGKALSDKE 134
HE V P A+ L R GG E++ VGG Y E +GG ++ R + +SD
Sbjct: 5 HERVAPPPAAE--LAGRRGGGGGEGMEIVTARVGGCGYGYEEEGGTRRQQRRRRKVSDGH 62
Query: 133 VRALLL 116
V A LL
Sbjct: 63 VVAQLL 68
>10_08_0666 -
19691985-19692216,19692327-19692404,19692508-19692837,
19692913-19693158,19693224-19693483,19694469-19695023
Length = 566
Score = 27.9 bits (59), Expect = 2.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 109 GRVFVPWNIHGKRNQKARSGKSL 41
GR VPW++HGK +R+ +++
Sbjct: 253 GRCLVPWHLHGKHFPSSRTRRAV 275
>11_03_0002 - 8850264-8850418,8850645-8851772,8851895-8852399
Length = 595
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 158 SVSPGYHAPFMLFWIGPPAYVY*LALVSPPSFPIL 262
+V+PG ++F PPAY + +AL + P P L
Sbjct: 266 TVAPGEAIDVLMFTDAPPAYYHMVALANQPPPPDL 300
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 292 RNPVAKHPLQKDRK-RGGRNECELINVGGRSYPEEHKGG 179
+ PV+K L + + G N+ + GG SYP +H G
Sbjct: 393 QGPVSKQQLPSNHQLSGSHNQPNIPGAGGPSYPAKHHLG 431
>02_05_0206 -
26773420-26773536,26773858-26773953,26774640-26774749,
26774835-26774935,26775340-26775638
Length = 240
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 371 RKHRPRREWPKRQKRLKAQF 312
RKHRP R WP+ +L F
Sbjct: 216 RKHRPTRVWPELSSKLLDYF 235
>12_02_1035 - 25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -1
Query: 378 EEEKASTKEGMAEA---AETTKGTISSMNRSSEIQLQNTLYRR 259
EEE+A+ + A A A + K + + RSS +QL LY R
Sbjct: 1524 EEERATRRAAAAAATAAASSGKSSAAVQRRSSRVQLVEYLYGR 1566
>12_02_0253 +
16443738-16443923,16444319-16444559,16444603-16444688,
16444788-16444919,16445003-16445167,16445623-16445910
Length = 365
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 188 MLFWIGPPAYVY*LALVSPPSFPILL*RVFCNWISDDLFMEEIVPLVVSAASAI 349
+L W+ PA V L L PP + F +++ D ++V L+ A+S I
Sbjct: 8 VLNWVATPAMVASLLLFYPPYYLFKTVHSFLSYLFPDDLARKVV-LITGASSGI 60
>04_04_1230 +
31929261-31929386,31929497-31929643,31929974-31930065,
31930159-31930255,31930533-31930576,31930708-31930796,
31931083-31931174,31931266-31931412,31931539-31931644,
31931736-31931812,31932281-31932352,31932738-31932865,
31932947-31933142,31933206-31933407,31933642-31933691
Length = 554
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 242 PPSFPILL*RVFCNWISDDLFMEEIVPLVVSAASAIP 352
P FP+LL + N + E++PL++SA S +P
Sbjct: 153 PQFFPLLLKLIASNGERLERKFSEVLPLMMSAGSFLP 189
>02_05_0383 -
28497525-28497689,28497776-28497946,28498115-28498385,
28499576-28499736
Length = 255
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 128 PNFFVRQCFPSVSPGYHAPFMLFWIG--PPAYV 220
PN F+ P V YH F+ +IG P AYV
Sbjct: 166 PNTFINLASPIVDVPYHIFFLATFIGLIPAAYV 198
>01_03_0287 -
14685536-14685697,14686536-14686686,14686778-14687016,
14687895-14687974,14688358-14688493
Length = 255
Score = 26.2 bits (55), Expect = 8.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 261 FCRGCFATGFLMTYSWK 311
FC GC+ TGF T W+
Sbjct: 212 FCVGCWKTGFFGTSCWQ 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,081,426
Number of Sequences: 37544
Number of extensions: 237878
Number of successful extensions: 623
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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