Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14i18
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical pr...    30   0.49 
AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical...    28   2.6  
AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical...    28   2.6  
AC084197-40|AAV34779.1|  377|Caenorhabditis elegans Hypothetical...    27   6.0  
AC084197-39|AAL00874.3|  392|Caenorhabditis elegans Hypothetical...    27   6.0  

>Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical
           protein M01G12.9 protein.
          Length = 272

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 11/31 (35%), Positives = 23/31 (74%)
 Frame = +1

Query: 61  LFDFFCRECSKEQKLALKIGEVPELLCQTML 153
           + D++  + +K+ K+ +KIGE+P++L +T L
Sbjct: 8   VIDYYHSKINKDSKMEIKIGELPKVLNKTYL 38


>AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27b protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 82  HGKRNQKARSGKSLDLLARESRKGRRE 2
           H K  QKARS  +L+ LA++++K + E
Sbjct: 97  HSKTRQKARSSVTLEKLAQKNQKMKEE 123


>AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27a protein.
          Length = 574

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 82  HGKRNQKARSGKSLDLLARESRKGRRE 2
           H K  QKARS  +L+ LA++++K + E
Sbjct: 205 HSKTRQKARSSVTLEKLAQKNQKMKEE 231


>AC084197-40|AAV34779.1|  377|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.31b protein.
          Length = 377

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 173 YHAPFMLFWIGPP-AYVY*LALVSP 244
           Y  PF++FW+G    YV  L L+SP
Sbjct: 144 YVTPFVVFWVGANYPYVRALLLISP 168


>AC084197-39|AAL00874.3|  392|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.31a protein.
          Length = 392

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 173 YHAPFMLFWIGPP-AYVY*LALVSP 244
           Y  PF++FW+G    YV  L L+SP
Sbjct: 159 YVTPFVVFWVGANYPYVRALLLISP 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,092,542
Number of Sequences: 27780
Number of extensions: 190910
Number of successful extensions: 466
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)