Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14i14
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   4.3  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    25   7.5  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   10.0 

>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 206 ASKPVTTGLVSDVLSIQHIFLSVSLPHWHS*SQCPIQHRFT*IEPKVVGQHVNYVKATVL 385
           AS  +  G+++D + +      + L   H   Q PI    T    +VVG++V Y KAT++
Sbjct: 279 ASGDIRGGILADEMGMGKTLEVLGLVLHH---QLPISLTDTCTFDQVVGKNVKYSKATLI 335

Query: 386 V 388
           +
Sbjct: 336 I 336


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 118 YGFFYKNNINYGLKCAITTLILKTVFLVFSSF 23
           Y + Y N  +YGLK  + +L L   F++FS F
Sbjct: 103 YSYLYDNISDYGLKYFLCSLPL---FVMFSDF 131


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -3

Query: 551 LILSQLPMSLMDSTRLVLGRCFNNTSVKQ*T*YQDFMD*LSPYGLGTSLAIRSSPLG 381
           L+   L    +D+  LVL   F+N +  + T   +F+D + P  L + + +    LG
Sbjct: 536 LLTDNLVTVFLDAHDLVLNLNFSNENYIEKTYIDEFLDFIQPPFLNSDIEMEHQLLG 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,466
Number of Sequences: 5004
Number of extensions: 44204
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)